Miyakogusa Predicted Gene

Lj0g3v0264849.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264849.1 tr|G7IJW3|G7IJW3_MEDTR Vacuolar protein
sorting-associated protein OS=Medicago truncatula
GN=MTR_2g0,65.39,0,seg,NULL; GB DEF: VPS13-LIKE PROTEIN,NULL; VACUOLAR
PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13),Vacuo,CUFF.17732.1
         (577 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g24310.1                                                       317   2e-86

>Glyma13g24310.1 
          Length = 2549

 Score =  317 bits (812), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/279 (62%), Positives = 201/279 (72%), Gaps = 32/279 (11%)

Query: 301 IKSLMICAHKIKEEKDCHFXXXXXXXXXXXXXXXXXXLPGPSIEFDQYSDGAMLADGCFE 360
           +KSLMICA K+KEEKD                          +  +  S GA + + C  
Sbjct: 1   MKSLMICACKMKEEKDSQVVL---------------------LSGNLSSPGAAVGEDCVS 39

Query: 361 MHYESPRSDIVCHKFFIYLNNADIHCYPHISGLLIGFFHRISAYNTMFEKSSESKTADIS 420
                P  +I     F+YLNNADIHCYPHI+GLLIGFFHR+SAY++ FEKSS S T DIS
Sbjct: 40  ----GPNIEI-----FMYLNNADIHCYPHIAGLLIGFFHRLSAYSSSFEKSSASNTVDIS 90

Query: 421 ESFLSFGLQKFGFSNYFDFGSSDSACIPFDRFPFVTIYNHGSLGSLESSLVYAIPDWRKY 480
           + F SFGLQKFGFSNYF+FG +DSACIP D FPFVTI+N GSLG+LES+LV+AIPDWRKY
Sbjct: 91  KIFSSFGLQKFGFSNYFEFGFTDSACIPLDCFPFVTIHNSGSLGNLESALVHAIPDWRKY 150

Query: 481 FTLRERKIRSSKFNMRSGSKIFQSSPSKCKSGF--ECESGIERTSNVFSIELHLYGIRVH 538
           F LR+RKI+SS  NMR GSK FQ SPSK KS F    E+GI  T ++FS ELHL+GIR H
Sbjct: 151 FILRDRKIKSSNINMRRGSKFFQVSPSKSKSDFVYSHETGIASTCDIFSTELHLFGIRAH 210

Query: 539 FHDSSCIIGTIMVPTSKTSLLLCEDNIDILSSSEGLVLT 577
           FHDSSCIIGTIMVPTSK+SLL CED++DILSSSEGL LT
Sbjct: 211 FHDSSCIIGTIMVPTSKSSLLFCEDSMDILSSSEGLALT 249