Miyakogusa Predicted Gene

Lj0g3v0262109.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262109.4 tr|Q9FGE6|Q9FGE6_ARATH CTC-interacting domain 13
protein OS=Arabidopsis thaliana GN=CID13 PE=4
SV=1,46.67,0.000000004,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RRM,RNA recognition m,CUFF.17275.4
         (125 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g40760.1                                                       167   3e-42
Glyma06g14030.1                                                       166   5e-42
Glyma04g40750.2                                                       150   3e-37
Glyma04g40750.1                                                       150   3e-37
Glyma06g14050.2                                                       150   4e-37
Glyma06g14050.1                                                       150   4e-37
Glyma15g40060.1                                                       128   1e-30
Glyma08g18810.1                                                       127   2e-30
Glyma08g18810.3                                                       127   2e-30
Glyma08g18810.2                                                       123   5e-29
Glyma06g14030.2                                                        72   1e-13
Glyma02g35640.1                                                        49   1e-06

>Glyma04g40760.1 
          Length = 380

 Score =  167 bits (422), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/125 (68%), Positives = 86/125 (68%), Gaps = 33/125 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAF EFTVAESAIAA
Sbjct: 289 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAA 348

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           LSCSGV LGSLPI                                 RVSPSKTPVRSR  
Sbjct: 349 LSCSGVILGSLPI---------------------------------RVSPSKTPVRSRAP 375

Query: 121 RSPMH 125
           R  MH
Sbjct: 376 RPSMH 380



 Score = 58.9 bits (141), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AF EFT  + A AA
Sbjct: 192 MIRRTVYVSDIDQLVTEEQLAGLFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEDGARAA 250

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           L+ SG  LG  P+RV     L S+T +     T L
Sbjct: 251 LNLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 280


>Glyma06g14030.1 
          Length = 378

 Score =  166 bits (420), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/125 (68%), Positives = 86/125 (68%), Gaps = 33/125 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAF EFTVAESAIAA
Sbjct: 287 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAA 346

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           LSCSGV LGSLPI                                 RVSPSKTPVRSR  
Sbjct: 347 LSCSGVILGSLPI---------------------------------RVSPSKTPVRSRAP 373

Query: 121 RSPMH 125
           R  MH
Sbjct: 374 RPTMH 378



 Score = 60.8 bits (146), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AF EFT  E A AA
Sbjct: 190 MTRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDEEGARAA 248

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           L+ SG  LG  P+RV     L S+T +     T L
Sbjct: 249 LNLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 278


>Glyma04g40750.2 
          Length = 369

 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/75 (93%), Positives = 71/75 (94%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTNIDKKLTQADVKHFFESICGEV RLRLLGDYHHSTRIAF EF +AESAIAA
Sbjct: 278 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAA 337

Query: 61  LSCSGVALGSLPIRV 75
           LSCSGV LGSLPIRV
Sbjct: 338 LSCSGVILGSLPIRV 352



 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AF EFT  E A AA
Sbjct: 181 MIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEEGARAA 239

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           LS SG  LG  P+RV     L S+T +     T L
Sbjct: 240 LSLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 269


>Glyma04g40750.1 
          Length = 369

 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/75 (93%), Positives = 71/75 (94%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTNIDKKLTQADVKHFFESICGEV RLRLLGDYHHSTRIAF EF +AESAIAA
Sbjct: 278 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAA 337

Query: 61  LSCSGVALGSLPIRV 75
           LSCSGV LGSLPIRV
Sbjct: 338 LSCSGVILGSLPIRV 352



 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AF EFT  E A AA
Sbjct: 181 MIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEEGARAA 239

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           LS SG  LG  P+RV     L S+T +     T L
Sbjct: 240 LSLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 269


>Glyma06g14050.2 
          Length = 369

 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/75 (93%), Positives = 71/75 (94%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTNIDKKLTQADVKHFFESICGEV RLRLLGDYHHSTRIAF EF +AESAIAA
Sbjct: 278 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAA 337

Query: 61  LSCSGVALGSLPIRV 75
           LSCSGV LGSLPIRV
Sbjct: 338 LSCSGVILGSLPIRV 352



 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AF EFT  E A AA
Sbjct: 181 MIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDDEGARAA 239

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           LS SG  LG  P+RV     L S+T +     T L
Sbjct: 240 LSLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 269


>Glyma06g14050.1 
          Length = 369

 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/75 (93%), Positives = 71/75 (94%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTNIDKKLTQADVKHFFESICGEV RLRLLGDYHHSTRIAF EF +AESAIAA
Sbjct: 278 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAA 337

Query: 61  LSCSGVALGSLPIRV 75
           LSCSGV LGSLPIRV
Sbjct: 338 LSCSGVILGSLPIRV 352



 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AF EFT  E A AA
Sbjct: 181 MIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDDEGARAA 239

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           LS SG  LG  P+RV     L S+T +     T L
Sbjct: 240 LSLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 269


>Glyma15g40060.1 
          Length = 296

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 79/125 (63%), Gaps = 33/125 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RT+YCTNIDKK++QA+VK+FFES CGEV RLRLLGD+ HSTRIAF EF +AESAI A
Sbjct: 205 MCARTVYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDHVHSTRIAFVEFAMAESAIIA 264

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSG+ LG+ PI                                 RVSPSKTPVR RV 
Sbjct: 265 LNCSGMLLGTQPI---------------------------------RVSPSKTPVRPRVT 291

Query: 121 RSPMH 125
           R   H
Sbjct: 292 RPASH 296



 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y + ID+ +T+  +   F S CG+V   R+ GD H   R AF EF     A  AL+ 
Sbjct: 111 RTVYVSEIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
            G  LG  P+RV     L S+T +L    T L
Sbjct: 170 GGTVLGYYPVRV-----LPSKTAILPVNPTFL 196


>Glyma08g18810.1 
          Length = 296

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 78/125 (62%), Gaps = 33/125 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTNIDKK++QA+VK+FFES CGEV RLRLLGD  HSTRIAF EF +AESAI A
Sbjct: 205 MCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIA 264

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSG+ LG+ PI                                 RVSPSKTPVR RV 
Sbjct: 265 LNCSGMLLGTQPI---------------------------------RVSPSKTPVRPRVP 291

Query: 121 RSPMH 125
           R   H
Sbjct: 292 RPASH 296



 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y + ID+ +T+  +   F S CG+V   R+ GD H   R AF EF     A  AL+ 
Sbjct: 111 RTVYVSEIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
            G  LG  P+RV     L S+T +L    T L
Sbjct: 170 GGTVLGYYPVRV-----LPSKTAILPVNPTFL 196


>Glyma08g18810.3 
          Length = 280

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 78/125 (62%), Gaps = 33/125 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTNIDKK++QA+VK+FFES CGEV RLRLLGD  HSTRIAF EF +AESAI A
Sbjct: 189 MCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIA 248

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSG+ LG+ PI                                 RVSPSKTPVR RV 
Sbjct: 249 LNCSGMLLGTQPI---------------------------------RVSPSKTPVRPRVP 275

Query: 121 RSPMH 125
           R   H
Sbjct: 276 RPASH 280



 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y + ID+ +T+  +   F S CG+V   R+ GD H   R AF EF     A  AL+ 
Sbjct: 95  RTVYVSEIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 153

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
            G  LG  P+RV     L S+T +L    T L
Sbjct: 154 GGTVLGYYPVRV-----LPSKTAILPVNPTFL 180


>Glyma08g18810.2 
          Length = 285

 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 66/76 (86%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTNIDKK++QA+VK+FFES CGEV RLRLLGD  HSTRIAF EF +AESAI A
Sbjct: 205 MCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIA 264

Query: 61  LSCSGVALGSLPIRVG 76
           L+CSG+ LG+ PIR G
Sbjct: 265 LNCSGMLLGTQPIRFG 280



 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y + ID+ +T+  +   F S CG+V   R+ GD H   R AF EF     A  AL+ 
Sbjct: 111 RTVYVSEIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
            G  LG  P+RV     L S+T +L    T L
Sbjct: 170 GGTVLGYYPVRV-----LPSKTAILPVNPTFL 196


>Glyma06g14030.2 
          Length = 323

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/31 (100%), Positives = 31/31 (100%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEV 31
           MCSRTIYCTNIDKKLTQADVKHFFESICGEV
Sbjct: 287 MCSRTIYCTNIDKKLTQADVKHFFESICGEV 317



 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AF EFT  E A AA
Sbjct: 190 MTRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDEEGARAA 248

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           L+ SG  LG  P+RV     L S+T +     T L
Sbjct: 249 LNLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 278


>Glyma02g35640.1 
          Length = 258

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 28  CGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSCSGVALGSLPIRVGDRFSLISRTNV 87
           CG+V   R+ GD +   R AF EFT  E A AAL+ SG  LG  P+RV     L S+T +
Sbjct: 114 CGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPLRV-----LPSKTAI 168

Query: 88  LETRATLL 95
           +    T L
Sbjct: 169 VPVNPTFL 176