Miyakogusa Predicted Gene

Lj0g3v0261929.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0261929.1 Non Chatacterized Hit- tr|I1LLB7|I1LLB7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,77.5,0,INTEGRATOR COMPLEX SUBUNIT 9,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL,CUFF.17237.1
         (443 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g21450.1                                                       690   0.0  

>Glyma11g21450.1 
          Length = 684

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/442 (77%), Positives = 376/442 (85%), Gaps = 2/442 (0%)

Query: 4   TCLSKGDGFHFPPCHMLEFCGIRILLDCPLDLSALIAFSPVPNASDVSSFEESNNTEANS 63
           TCLSKG GFHFPPCHML FCGIRILLDCPLDLSAL+AFSPVP A D    EES NTEAN+
Sbjct: 1   TCLSKGGGFHFPPCHMLNFCGIRILLDCPLDLSALMAFSPVPTALDCLPVEESYNTEANA 60

Query: 64  FLNSVAQSQKRQKIDKPLDGKSLLFAEPWYKTVNNLHLWNASFIDVILISSPMGIMGLPF 123
           F +S   S KRQKI+  LD KSLLFAEPWYKTVNNLHLWNASFIDV+LISSPMGIMGLPF
Sbjct: 61  FFDSRFGSGKRQKIENLLDAKSLLFAEPWYKTVNNLHLWNASFIDVVLISSPMGIMGLPF 120

Query: 124 LTRTKGFSAKIYVTEASARLGQLMMEELVSMHGEFRQFYGPGESNFPPWLKQEELEMLPS 183
           LTRTKGFSAKIYVTEASAR+GQLMME+LVSMH EFRQFYGPGESNFP WL+ EELE+LPS
Sbjct: 121 LTRTKGFSAKIYVTEASARIGQLMMEDLVSMHAEFRQFYGPGESNFPSWLRHEELEVLPS 180

Query: 184 ILREIISGKDGGELGGWMPLYSAADVKDCLLKIHTLKYAEEACYNGTLVIKAFSSGVEIG 243
            LRE+I GKDG ELGGWMPLYSAADVKD +LKIHT+ YAEE C+NGTLVIKAFSSG+EIG
Sbjct: 181 ELRELILGKDGVELGGWMPLYSAADVKDFMLKIHTVNYAEEVCFNGTLVIKAFSSGIEIG 240

Query: 244 SCNWIMNGPKGDIAYLSSSSFFSAHAMTFDYRSLQGSCTLIYSDFSALSDVQEVEAGDSY 303
           SCNWI+N PKGDIAYLS SSF SAHAM FDY SLQG+C LIYSDF +L D Q+ E GD+Y
Sbjct: 241 SCNWILNSPKGDIAYLSGSSFISAHAMPFDYHSLQGTCVLIYSDFLSLGDTQDGENGDNY 300

Query: 304 SIRTADALLPQSVQDLDEFNLNSDE--NSEEKEKLVFICSCAIECVKIGGSVLVPVNRLG 361
           S+ TAD LLP S + L  F L        +EKEKLVFICS A+E +K GGSVL+P +RLG
Sbjct: 301 SVSTADKLLPISNEYLCLFILTFMLVIAEKEKEKLVFICSHAMEHIKQGGSVLIPFDRLG 360

Query: 362 TILQLLEEITTSLEALAMKVPVYIISSVAEELLALLNVIPEWLCKQRQERLFAGEPLFAH 421
           TIL LLEE+T SLEA   KVPVYIISSVAEELLALLN+IPEWLCKQRQE+LF GEPLFAH
Sbjct: 361 TILLLLEEMTASLEASDTKVPVYIISSVAEELLALLNIIPEWLCKQRQEKLFDGEPLFAH 420

Query: 422 VKLLKEKKIHVVPDVLSPQLLM 443
           +KLLKE+KIHVVP + S +LL+
Sbjct: 421 LKLLKERKIHVVPAIHSHELLI 442