Miyakogusa Predicted Gene

Lj0g3v0259499.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259499.1 Non Chatacterized Hit- tr|K3XE03|K3XE03_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si000120,72,0.0000000000001,DNA binding domain with preference for
A/T r,AT hook, DNA-binding motif; AT_hook,AT hook,
DNA-bindin,CUFF.17094.1
         (354 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g07890.1                                                       270   2e-72

>Glyma10g07890.1 
          Length = 781

 Score =  270 bits (690), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 166/331 (50%), Positives = 196/331 (59%), Gaps = 65/331 (19%)

Query: 76  KVRPKKDGSTKDKSSQIKRPRGRPRKNSTVIVVDDTNCETQHILSLEVQFAGKCIEFSAP 135
           ++ PKKDG T DKS+QIK PRGR RKNST I VDD NCETQ+  +  VQ A    EF A 
Sbjct: 363 EILPKKDGGTNDKSTQIKNPRGRTRKNSTTITVDDVNCETQNKSACYVQVAQNSTEFLAS 422

Query: 136 DGNLENSEEMLPTTHKRR-------------------RGPKKNNAT-------------- 162
           DGNLEN+EE+L T  ++R                   R PK N+                
Sbjct: 423 DGNLENNEEILITYKRKRKAKENKERNEESALIKRPRRRPKSNSKEVTADDPNCEDHSMP 482

Query: 163 ----------------------NEKPAPMKRPRGRPKKNSTEVTASDSNCKDQFVPLAVQ 200
                                 NEK A MK  RGRP  NS  V+  D NC+++ +PL VQ
Sbjct: 483 LDVQVPEDSAEFLSPDVNHDNCNEKSALMKTLRGRPS-NSKGVSTGDPNCENEIMPLDVQ 541

Query: 201 FPEDLAEFNSPIVAYGNCNDHAAQQCSHTNQKHAKKADFAHDSKAL----SRLNINH--M 254
            PED AEF S  VA  NCN++A  QCS T Q+H K+A  A ++ +     S L INH  M
Sbjct: 542 VPEDSAEFLSSNVARVNCNEYALPQCSVTKQRHTKEAVSACNTISTTLKSSGLKINHTEM 601

Query: 255 EGRYNEGMSQPLLIQCENETNYQLCSSSELEPPAATCSVP-DITLPRVVSCLAHNGKVAW 313
           EGRY++  SQPL  Q ENE N+Q   S ELE P ATCS+P D+TLPRVVSCLAHNGKVAW
Sbjct: 602 EGRYSQDRSQPL--QYENEANHQPHWSFELEAPPATCSIPEDVTLPRVVSCLAHNGKVAW 659

Query: 314 DVKWRPLNISEPLCKYRMGYLAVLLGNGSLE 344
           DVKWRP NIS+  CK+RMG+LAVLLGNGSLE
Sbjct: 660 DVKWRPTNISDSFCKHRMGHLAVLLGNGSLE 690



 Score =  234 bits (596), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/294 (44%), Positives = 167/294 (56%), Gaps = 60/294 (20%)

Query: 1   MNVGGSVWALDWCPQIHEEPDCSVKCEFVAVATHPPGSSYHKMGDSLVGRGVVQIWCLLN 60
           MNVGGSVWALDWCPQIHE+PDCSVKCEF+AVA HPPGSSYHKMG  L GRGVVQIWCLLN
Sbjct: 173 MNVGGSVWALDWCPQIHEKPDCSVKCEFIAVAAHPPGSSYHKMGAPLTGRGVVQIWCLLN 232

Query: 61  IREHNE--------------------------------DTSSVTEKRKVRP--------- 79
           ++EHN+                                D S+  +K + RP         
Sbjct: 233 VKEHNDKLSKIKRPKGRPRKNPTVVDEMNCDKKDGDINDKSTQIKKPRGRPRKNPTVLAV 292

Query: 80  ------KKDGSTKDKSSQIKRPRGRPRKNSTVIVVDDTNCETQHILSLEVQFAGKCIEFS 133
                 KKD  T D S+QIK+PRGRPRKN TV  VDD NCE Q++ +L VQF     EF 
Sbjct: 293 DDMNCDKKDAGTNDISTQIKKPRGRPRKNPTVSAVDDMNCEIQYMPALAVQFPENSTEFP 352

Query: 134 APDGNLENSEEMLPTTHKRRRGPKKNNATNEKPAPMKRPRGRPKKNSTEVTASDSNCKDQ 193
            PDGN +N+EE+L         PKK+  TN+K   +K PRGR +KNST +T  D NC+ Q
Sbjct: 353 TPDGNHDNNEEIL---------PKKDGGTNDKSTQIKNPRGRTRKNSTTITVDDVNCETQ 403

Query: 194 -FVPLAVQFPEDLAEFNSPIVAYGNCNDHAAQQCSHTNQKHAKKADFAHDSKAL 246
                 VQ  ++  EF   + + GN  ++     ++  ++ AK+    ++  AL
Sbjct: 404 NKSACYVQVAQNSTEF---LASDGNLENNEEILITYKRKRKAKENKERNEESAL 454