Miyakogusa Predicted Gene
- Lj0g3v0258629.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0258629.2 tr|F2DEQ1|F2DEQ1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,85.71,3e-17,SUBFAMILY NOT
NAMED,NULL; EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT
(EIF-3),NULL; eIF3_p135,CUFF.17021.2
(147 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma06g30000.1 293 5e-80
Glyma04g24430.1 284 3e-77
Glyma08g22850.1 189 7e-49
Glyma16g02770.1 187 3e-48
Glyma07g03250.1 186 7e-48
Glyma07g06160.1 184 2e-47
Glyma15g42670.1 79 1e-15
Glyma08g16180.1 78 3e-15
Glyma14g28720.1 71 3e-13
>Glyma06g30000.1
Length = 1762
Score = 293 bits (749), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 135/147 (91%), Positives = 141/147 (95%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
MEMAHKYY+DTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV
Sbjct: 657 MEMAHKYYVDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 716
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYEL 120
QSLCIHEMV RAYKHILQAVVAAVDNVS++ASSIASCLNILLGTPSPE ND DITSC EL
Sbjct: 717 QSLCIHEMVVRAYKHILQAVVAAVDNVSELASSIASCLNILLGTPSPETNDEDITSCEEL 776
Query: 121 KWKWVEMFLLKRFGWQWKHESGQDLRK 147
KW+WVE FLLKRFGWQWK E+G+DLRK
Sbjct: 777 KWRWVENFLLKRFGWQWKDENGKDLRK 803
>Glyma04g24430.1
Length = 1817
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 132/147 (89%), Positives = 139/147 (94%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
MEMAHKYY++TALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV
Sbjct: 521 MEMAHKYYVETALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 580
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYEL 120
QSLCIHEMV RAYKHILQAVVAAVDNVS++AS+IASCLNILLG PSPE ND DITSC EL
Sbjct: 581 QSLCIHEMVVRAYKHILQAVVAAVDNVSELASTIASCLNILLGMPSPETNDEDITSCDEL 640
Query: 121 KWKWVEMFLLKRFGWQWKHESGQDLRK 147
KW+WVE FLLKRFG QWK E+GQDLRK
Sbjct: 641 KWRWVENFLLKRFGCQWKDENGQDLRK 667
>Glyma08g22850.1
Length = 1550
Score = 189 bits (481), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 90/148 (60%), Positives = 116/148 (78%), Gaps = 2/148 (1%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+ MAHK+Y + ALPKL DFGSLELSPVDGRTLTDFMH RGLQM SLG+VV+LA+ LPH+
Sbjct: 624 ISMAHKFYDEVALPKLAMDFGSLELSPVDGRTLTDFMHLRGLQMRSLGKVVKLAENLPHI 683
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPE-INDADITSCYE 119
QSLCIHEM+ RA+KH+L+AV+A+V+NV+D++S+IAS LN LLG E +D ++ +
Sbjct: 684 QSLCIHEMITRAFKHLLKAVIASVENVADLSSAIASTLNFLLGGSRTEDTSDQSLSDDHN 743
Query: 120 LKWKWVEMFLLKRFGWQWKHESGQDLRK 147
L+ +W+ +FL KRFGW E Q LRK
Sbjct: 744 LRIQWLHLFLSKRFGWTLNDEF-QHLRK 770
>Glyma16g02770.1
Length = 1873
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 113/147 (76%), Gaps = 2/147 (1%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+E++ KYY D ALPKLVADFGSLELSPVDGRTLTDFMHTRGL+M SLG VV+L++KL HV
Sbjct: 728 IELSRKYYTDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMHSLGHVVKLSEKLSHV 787
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYEL 120
QSLCIHEM+ RA+KHIL+AV++AVD MASSIA LN+LLG P +D + L
Sbjct: 788 QSLCIHEMIVRAFKHILRAVISAVDK-EKMASSIAGALNLLLGVPENRESDKS-REVHPL 845
Query: 121 KWKWVEMFLLKRFGWQWKHESGQDLRK 147
WKW+E+FL KRF W + +D++K
Sbjct: 846 VWKWLELFLKKRFDWDLNKLNYKDVKK 872
>Glyma07g03250.1
Length = 1636
Score = 186 bits (472), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 90/148 (60%), Positives = 113/148 (76%), Gaps = 2/148 (1%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+ MAHK+Y + ALPKL DFGSLELSPVDGRTLTDFMH RGLQM SLG+VV+LA+ LPH+
Sbjct: 650 ISMAHKFYDEVALPKLAMDFGSLELSPVDGRTLTDFMHLRGLQMRSLGKVVKLAENLPHI 709
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEIN-DADITSCYE 119
QSLCIHEM+ RA+KH+L+AV A+VDNV+D++++IAS LN LLG E D + +
Sbjct: 710 QSLCIHEMITRAFKHLLKAVTASVDNVADLSAAIASTLNFLLGGSRTEDGADQILIDDHN 769
Query: 120 LKWKWVEMFLLKRFGWQWKHESGQDLRK 147
L+ +W+ +FL KRFGW E Q LRK
Sbjct: 770 LRIQWLHLFLSKRFGWTLNDEF-QHLRK 796
>Glyma07g06160.1
Length = 1716
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 114/148 (77%), Gaps = 4/148 (2%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+ ++ KYY D ALPKLVADFGSLELSPVDGRTLTDFMHTRGL+M SLG VV+L++KL HV
Sbjct: 651 INLSRKYYTDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHV 710
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADIT-SCYE 119
QSLCIHEM+ RA+KHIL+AV++AVD MASSIA LN+LLG PE + D + +
Sbjct: 711 QSLCIHEMIVRAFKHILRAVISAVDK-EKMASSIAGALNLLLGV--PENRELDKSREVHP 767
Query: 120 LKWKWVEMFLLKRFGWQWKHESGQDLRK 147
L WKW+E+FL KRF W + +D+RK
Sbjct: 768 LVWKWLELFLKKRFDWDPNKLNYKDVRK 795
>Glyma15g42670.1
Length = 1350
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 6 KYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCI 65
+Y D LPK + D +LE+SP+DG+TLT+ +H G+ + +GRV LPH+ LC
Sbjct: 709 QYLTDVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINVRYIGRVAGGTKHLPHLWDLCN 768
Query: 66 HEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGT---PSPEINDADITSCYELKW 122
E+V R+ KHI++ ++ ++ D+A +++ LN L G+ PS ++ A+ T K
Sbjct: 769 SEIVVRSAKHIIKDLLRETED-HDLAPAVSHFLNCLFGSCQAPSGKV-PANSTQSNTPKK 826
Query: 123 KW 124
W
Sbjct: 827 AW 828
>Glyma08g16180.1
Length = 1423
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 19/144 (13%)
Query: 6 KYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCI 65
+Y D LPK + D +LE+SP+DG+TLT+ +H G+ + +G+V LPH+ LC
Sbjct: 759 QYLTDVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINVRYIGKVAGGTKHLPHLWDLCN 818
Query: 66 HEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYELKWKWV 125
+E+V R+ KHI++ ++ ++ D+A +++ LN L G SC K
Sbjct: 819 NEIVVRSAKHIIKDLLRETED-HDLAPALSHFLNCLFG------------SCQAPGGKVP 865
Query: 126 EMFL---LKRFGWQ---WKHESGQ 143
F R WQ KH GQ
Sbjct: 866 ANFTQSKTPRKAWQRSPGKHSKGQ 889
>Glyma14g28720.1
Length = 289
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+ + +Y ID LPK + + +LE+SP+DG+TLT+ +H G+ + +G+V LPH+
Sbjct: 168 LGVQRQYLIDVVLPKFIQELCTLEVSPMDGQTLTEALHAHGINVFYIGKVPGGTKHLPHL 227
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVS-----DMASSIASCLNILLGT 104
LC +E+V R KHI++ + A+D + D A +++ LN L G+
Sbjct: 228 WDLCNNEIVVRYAKHIIK-LRKALDLLRKTEDHDFAPALSHFLNCLFGS 275