Miyakogusa Predicted Gene

Lj0g3v0258039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258039.1 tr|A9SZZ9|A9SZZ9_PHYPA RNA polymerase II
transcription elongation factor SPT5 OS=Physcomitrella
pate,45.97,1e-18,Spt5-NGN,Transcription elongation factor Spt5, NGN
domain; Spt5_N,Spt5 transcription elongation fact,gene.g20107.t1.1
         (419 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g12770.1                                                       283   2e-76
Glyma04g42000.1                                                       283   3e-76
Glyma20g24690.1                                                        86   6e-17
Glyma10g42360.1                                                        86   6e-17

>Glyma06g12770.1 
          Length = 1039

 Score =  283 bits (725), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/233 (64%), Positives = 172/233 (73%), Gaps = 42/233 (18%)

Query: 76  GADLPEEVDGRRMCGSRVLPYFKEDHDDLEAMAASIEKRYGRRLEDYNEEIAYVEQ-AFL 134
           GADLPEE DGR+M  SR+LP+ +EDH+DLEAMA SI++RYGRRL DY+EE   VEQ A L
Sbjct: 119 GADLPEEDDGRKMRSSRMLPHHQEDHEDLEAMARSIQERYGRRLTDYDEETTDVEQQALL 178

Query: 135 PSVRDPKLWMLKCAIGQERKTAVCLMQKCMNKGSELKIRSAIALDHLKNYIYVEADKEAH 194
           PSVRDPKLWM+KCAIG+ER+TAVCLMQK ++KGSEL+IRSAIALDHLKNYIYVEADKEAH
Sbjct: 179 PSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAH 238

Query: 195 VREACKGLRSLFGQKPTLVPVREMTGVLSVESKAANLARDARVRRKI------------- 241
           VREACKGLR++FGQK TLVP+REMT VLSVESKA +LARD  VR KI             
Sbjct: 239 VREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDV 298

Query: 242 -------------------------GRELVKKKAFVPPHR---INEARELHKR 266
                                    GRE+VKKKAFVPP R   ++EARELH R
Sbjct: 299 DNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIR 351



 Score =  165 bits (417), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 94/111 (84%)

Query: 265 KRQFMIGDFVLVINGDLKNLKGWVEKVDEDIVHIRPKNEGLPKTLTLNKKELCKYFEPGS 324
           K  FM GD V+VI GDLKNLKG VEKVDED VHIRP+ E LPKT+ +N+KELCKYFEPG+
Sbjct: 423 KGHFMKGDAVIVIKGDLKNLKGKVEKVDEDNVHIRPEMEDLPKTIAVNEKELCKYFEPGN 482

Query: 325 HVKVVAGAEEGETGMVVKVEQHVMVIISDTTKQQICVFADHVMESSGVIAG 375
           HVKVV+GA+EG TGMVVKVEQHV+++ISDTTK+ I VFAD V+ESS V  G
Sbjct: 483 HVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTG 533


>Glyma04g42000.1 
          Length = 1038

 Score =  283 bits (723), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 151/233 (64%), Positives = 172/233 (73%), Gaps = 42/233 (18%)

Query: 76  GADLPEEVDGRRMCGSRVLPYFKEDHDDLEAMAASIEKRYGRRLEDYNEEIAYVEQ-AFL 134
           G+DLPEE DGRRM  SR+LP+ +EDH+DLEAMA SI++RYGRRL DY+EE   VEQ A L
Sbjct: 130 GSDLPEEDDGRRMRSSRMLPHHQEDHEDLEAMARSIQERYGRRLTDYDEETTDVEQQALL 189

Query: 135 PSVRDPKLWMLKCAIGQERKTAVCLMQKCMNKGSELKIRSAIALDHLKNYIYVEADKEAH 194
           PSVRDPKLWM+KCAIG+ER+TAVCLMQK ++KGSEL+IRSAIALDHLKNYIYVEADKEAH
Sbjct: 190 PSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAH 249

Query: 195 VREACKGLRSLFGQKPTLVPVREMTGVLSVESKAANLARDARVRRKI------------- 241
           VREACKGLR++FGQK TLVP+REMT VLSVESKA +LARD  VR KI             
Sbjct: 250 VREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRLKIGTYKGDLAKVVDV 309

Query: 242 -------------------------GRELVKKKAFVPPHR---INEARELHKR 266
                                    GRE+VKKKAFVPP R   ++EARELH R
Sbjct: 310 DNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIR 362



 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 83/111 (74%), Gaps = 12/111 (10%)

Query: 265 KRQFMIGDFVLVINGDLKNLKGWVEKVDEDIVHIRPKNEGLPKTLTLNKKELCKYFEPGS 324
           K  FM GD V+V+ GDLKNLKG VEKVDED VHIRP+ E LPKT+ +N+KELCKYFEPG+
Sbjct: 434 KGHFMKGDAVIVVKGDLKNLKGKVEKVDEDNVHIRPEMEDLPKTIAVNEKELCKYFEPGN 493

Query: 325 HVKVVAGAEEGETGMVVKVEQHVMVIISDTTKQQICVFADHVMESSGVIAG 375
           HVKVV+GA+EG TGMVVKVEQH            I VFAD V+ESS V  G
Sbjct: 494 HVKVVSGAQEGATGMVVKVEQH------------IRVFADDVVESSEVTTG 532


>Glyma20g24690.1 
          Length = 1420

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 13/162 (8%)

Query: 92  RVLPYFKEDHDDLEAMAASIEKRYG--RRLEDYNEEIAYVEQAFLPSVRD------PKLW 143
           RV+P  KE+  D E     +E+RY    R   +++E    +     S+ +      P +W
Sbjct: 76  RVVP--KEEMLDEEEWDRILEERYKDPSRFIRFSDEFGDDKGMDPSSIHEGVDELTPSIW 133

Query: 144 MLKCAIGQERKTAVCLMQK---CMNKGSELKIRSAIALDHLKNYIYVEADKEAHVREACK 200
            +KC +G+ER +A+CLMQK     + G++LKI+SA ++DH+K ++Y+EA+K+  + EAC+
Sbjct: 134 KVKCTVGRERLSALCLMQKFADLYSLGTKLKIKSAFSVDHMKGFVYIEAEKQYDINEACQ 193

Query: 201 GLRSLFGQKPTLVPVREMTGVLSVESKAANLARDARVRRKIG 242
           G+  ++  +   VP  E+  + SV S+   ++     R K G
Sbjct: 194 GIPGIYVTRVAPVPNSEVYNLFSVRSRTPEISEGMWARIKGG 235


>Glyma10g42360.1 
          Length = 1452

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 13/162 (8%)

Query: 92  RVLPYFKEDHDDLEAMAASIEKRYG------RRLEDYNEEIAYVEQAFLPSVRD--PKLW 143
           RV+P  KE+  D E     +E+RY       R  +++ ++      +    V +  P +W
Sbjct: 107 RVVP--KEEMVDEEEWDRILEERYKDPSRFIRFADEFGDDKGMDPSSIHEGVDELMPYIW 164

Query: 144 MLKCAIGQERKTAVCLMQKCMNK---GSELKIRSAIALDHLKNYIYVEADKEAHVREACK 200
            +KC +G+ER +A+CLMQK  +    G++LKI+SA A+DH+K ++Y+EA+K+  + EAC+
Sbjct: 165 KVKCTVGRERLSALCLMQKFADLDSLGTKLKIKSAFAVDHMKGFVYIEAEKQYDINEACQ 224

Query: 201 GLRSLFGQKPTLVPVREMTGVLSVESKAANLARDARVRRKIG 242
           G+  ++  +   VP  E+  + SV S+   ++     R K G
Sbjct: 225 GIPGIYVTRVAPVPNSEVYHLFSVRSRTPEISEGMWARIKGG 266