Miyakogusa Predicted Gene

Lj0g3v0257549.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257549.2 tr|G7IHZ6|G7IHZ6_MEDTR MMS19 nucleotide excision
repair protein-like protein OS=Medicago truncatula
,75,0,MMS19_N,Transcription protein MMS19, N-terminal; no
description,Armadillo-like helical; ARM repeat,A,CUFF.16960.2
         (513 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g43100.1                                                       394   e-109
Glyma20g17590.1                                                        98   2e-20

>Glyma13g43100.1 
          Length = 1851

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/273 (73%), Positives = 222/273 (81%), Gaps = 5/273 (1%)

Query: 241  LSRALMSAFSSTPLFEPFVIPXXXXXXXXXXXXAKIDSLKYLRECSSKYGAERISKYAKA 300
            LS   +SAFSSTPLFEPFVIP            AKIDSLKYLR CSSKYGA RI+KYA A
Sbjct: 960  LSVVPLSAFSSTPLFEPFVIPLLLEKLSSSLHSAKIDSLKYLRVCSSKYGAGRIAKYAGA 1019

Query: 301  IWSSLKDTLYTYLGEPDFSFTQAPAGGIGFPKSDIAIEAMSLLQQLIVQNSSLLVSLIID 360
            IWSSLKDTL TYLGEPDFSFT AP  GIGFP+++  +EA+SLLQQLIVQNSSLLVSLIID
Sbjct: 1020 IWSSLKDTLSTYLGEPDFSFTIAPVDGIGFPENEFVLEALSLLQQLIVQNSSLLVSLIID 1079

Query: 361  DQDVNMIFNTIASYDVYDAIPEQEKKKLHAIGRILYITAKTSITSCNAVFQSLFSQMMDN 420
            D+DVN IF+TIASY+ YDAIP QEKKKLHAIGRIL ITAKT+I+SCNAVF+SLFS++MDN
Sbjct: 1080 DEDVNSIFSTIASYETYDAIPVQEKKKLHAIGRILNITAKTTISSCNAVFESLFSRLMDN 1139

Query: 421  SGFSVSNIDSSLNVDSIPSQKVKLGFLYLCIELLSGCNELIV-SEVPALQYNSKSETCCV 479
             GFSV   +S    D  PSQ+VK GFLY+CIELL+GC ELIV S+ PALQY  + ETCC 
Sbjct: 1140 LGFSVRFPNS----DIPPSQRVKFGFLYVCIELLAGCRELIVGSDEPALQYVFEHETCCT 1195

Query: 480  ILHSFSAPLFNAFGSVLAVRADRCPLGPDIYIG 512
            +LH FS PLFNAFGSVLAV ADRCPL PD YIG
Sbjct: 1196 MLHRFSTPLFNAFGSVLAVSADRCPLDPDTYIG 1228



 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/263 (72%), Positives = 211/263 (80%), Gaps = 11/263 (4%)

Query: 1   MAETTQLTRHIEAYVASSSTPTHQASSLDAIGYLVNTNALTLEALVREMEMYLTTSDHVV 60
           MAETTQLTRHIE+YV SSS PTHQA+SL+AI  LVNT+ALTLEAL+RE+EMYLTT+D+VV
Sbjct: 1   MAETTQLTRHIESYVDSSS-PTHQAASLNAIASLVNTDALTLEALIRELEMYLTTTDNVV 59

Query: 61  RSRGILLLAEVLTRIASKPLGSSTIHSLAGFFNERLADWRAVRGALVGCLALLRRKSVV- 119
           R+RGILLLAEV+T I SKPL S+TIHSL GFF +RLADWRAVRGALVGCLAL+RRKSVV 
Sbjct: 60  RARGILLLAEVMTHIESKPLNSATIHSLVGFFKDRLADWRAVRGALVGCLALIRRKSVVG 119

Query: 120 ---DSDAKAIAQSILQYLQVQSLGQ-YDRKXXXXXXXXXXXXYSDAVAPLGEDLIYGICE 175
              DSDA  IAQS LQY+QVQSLGQ YDRK            Y DAV  LGEDLIYGICE
Sbjct: 120 MVTDSDATTIAQSFLQYMQVQSLGQHYDRKLCFELLDCLLERYFDAVTTLGEDLIYGICE 179

Query: 176 AIDTEKDPECLMLAFHIVESLAQLYPEPSGLLGSFATDIFAILEAYFPIHFTHPNSGDIH 235
           AID EKDP+CL LAFHIVESLAQL P+ SGLL SFA D+F ILE YFPIHFT P+SGD H
Sbjct: 180 AIDAEKDPDCLKLAFHIVESLAQLNPDSSGLLASFAKDVFDILEPYFPIHFTRPSSGDTH 239

Query: 236 IQRDDLSRALMSAFSSTPLFEPF 258
           +QR DLS +LM       L EPF
Sbjct: 240 VQR-DLSTSLMREM----LVEPF 257


>Glyma20g17590.1 
          Length = 169

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 52/63 (82%)

Query: 285 CSSKYGAERISKYAKAIWSSLKDTLYTYLGEPDFSFTQAPAGGIGFPKSDIAIEAMSLLQ 344
           CSSKYGA RI+KY +AIWSSLKDTL TYL EP FSF  AP  GIGFP+++  +EA+SLLQ
Sbjct: 2   CSSKYGAGRIAKYVRAIWSSLKDTLSTYLREPYFSFIIAPVDGIGFPENEFVLEALSLLQ 61

Query: 345 QLI 347
           QLI
Sbjct: 62  QLI 64