Miyakogusa Predicted Gene

Lj0g3v0257529.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257529.3 tr|B9PCE8|B9PCE8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_795088
PE=4,46.6,0.0000000000003,DNA REPAIR/TRANSCRIPTION PROTEIN
MET18/MMS19,NULL; seg,NULL,CUFF.16957.3
         (504 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g43100.1                                                       731   0.0  
Glyma05g34860.1                                                       142   1e-33

>Glyma13g43100.1 
          Length = 1851

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/507 (72%), Positives = 423/507 (83%), Gaps = 8/507 (1%)

Query: 1    MSYRRLVVEKMVELLSLDDVTLPFSLKVEALSDIGMTGMKYMLTILQGLGGAVFANLSEV 60
            MSYR LVVEK+VE+LSLDD+TLPFSL++EALS+IGMTGMK MLTILQGLG AVF+NLS+V
Sbjct: 1295 MSYRNLVVEKIVEILSLDDITLPFSLELEALSNIGMTGMKNMLTILQGLGRAVFSNLSKV 1354

Query: 61   CRNVRSSEIAIQLLECYSCKLLPWIHENGGSEEFVVQFVVDIWSQAGNYVDLRAPFE-KG 119
             RN+RSS+IA+QLLECYSC+LLPWIHENGGSE+FV+QFVVDIWSQAGN +D    FE KG
Sbjct: 1355 HRNLRSSDIAVQLLECYSCQLLPWIHENGGSEDFVMQFVVDIWSQAGNCMDFSTLFEEKG 1414

Query: 120  LLYAIMKVMQISVGSCSVESQNIILQKAYSIISSHTNFQ-FNEVGRSPLTPEKYDISPRD 178
            LL AIMK M++SVGSC+VESQN+I+QKAY ++SSHTNFQ   EV R PLTP  Y+IS RD
Sbjct: 1415 LLDAIMKAMKLSVGSCAVESQNLIIQKAYCVLSSHTNFQQLKEVERLPLTPGNYNISLRD 1474

Query: 179  EGMLSLFASVTIAVSPKTHIPNIRGVLRLFIIALLKG-VVPVAQALGSMINKFISKANDA 237
            EG++SLFASV IAV PKT+IPN R ++ LFII LL+G VVPVAQALGS++NK +S +N A
Sbjct: 1475 EGLISLFASVVIAVFPKTYIPNKRVLMHLFIITLLRGGVVPVAQALGSILNKLVSTSNSA 1534

Query: 238  ENFNDLTLEEALDVIFSTKIWVSSTDVLQGCNGTNNGSEMVLTDLCLGIANDRLLQTNAI 297
            EN +DLTLEEALDVIF+TKI  SSTD     NG +NG+EMVLTD+CLGIANDR+LQ NAI
Sbjct: 1535 ENSSDLTLEEALDVIFNTKISFSSTD-----NGRSNGNEMVLTDICLGIANDRMLQINAI 1589

Query: 298  CGLSWIGKGLLLRGHEKIKDITMIFIECLISGTKSALPLTKDSLENTEEQKWDPLIMKCS 357
            CGLSWIGKGLLL GHEKIKDI MIF+ECLISGTKSA PL KDSLENTEE   D L+MKC+
Sbjct: 1590 CGLSWIGKGLLLSGHEKIKDIIMIFLECLISGTKSASPLIKDSLENTEEHIQDLLVMKCA 1649

Query: 358  ADAFHVLVSDSDDCLNRKFHAIIRPLYKQRFFSSIMPIFQQLITKXXXXXXXXXXXXXXA 417
            ADAFHVL+SDS+ CLNRKFHA+IRPLYKQRF SS+MPI QQ+ITK              A
Sbjct: 1650 ADAFHVLMSDSEVCLNRKFHAMIRPLYKQRFSSSVMPILQQIITKSHSSLSRSFLYRAFA 1709

Query: 418  HIISDTPQIVIVSEAKKLIPVLLNCLSMLTDDIQDKDXXXXXXXXXXXXXTEKNGQEAVT 477
            HI+SDTP + I+SEAKKLIPVLL+CLSMLT+DIQDKD             TEKNGQEA  
Sbjct: 1710 HILSDTPMVAILSEAKKLIPVLLDCLSMLTEDIQDKDMLYGLLLVLSGILTEKNGQEAAI 1769

Query: 478  ENAHIIINCLIKLVDYPHKTLVRETAV 504
            ENAHIIINCLIKLVDYPHK LVRETA+
Sbjct: 1770 ENAHIIINCLIKLVDYPHKMLVRETAI 1796


>Glyma05g34860.1 
          Length = 113

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 85/110 (77%), Gaps = 2/110 (1%)

Query: 214 KGVVPVAQALGSMINKFISKANDAENFNDLTLEEALDVIFSTKIWVSSTDVLQGCNGTNN 273
            GVVPVAQAL S++ K +S +N AEN +  TLEEALDVIF+T I   ST + Q CNG  N
Sbjct: 5   SGVVPVAQALMSILTKLVSTSNGAENSSGFTLEEALDVIFNTNISFCSTHMFQRCNG--N 62

Query: 274 GSEMVLTDLCLGIANDRLLQTNAICGLSWIGKGLLLRGHEKIKDITMIFI 323
           G+EMVLTD+CLGI NDR+LQ N+ICGLSWIGK L LR  EKI DITMIF+
Sbjct: 63  GNEMVLTDICLGITNDRMLQINSICGLSWIGKVLPLRSDEKIIDITMIFM 112