Miyakogusa Predicted Gene

Lj0g3v0257079.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257079.1 tr|C9J5S9|C9J5S9_HUMAN DNA repair protein RAD51
homolog 2 (Fragment) OS=Homo sapiens GN=RAD51B PE=4 ,38.81,1e-16,DNA
REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2,NULL; RECA/RAD51/RADA DNA
STRAND-PAIRING FAMILY MEMBER,NUL,CUFF.16895.1
         (192 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g04920.1                                                       336   8e-93
Glyma13g40480.1                                                       106   1e-23
Glyma18g52510.1                                                        64   1e-10
Glyma13g17530.1                                                        58   5e-09
Glyma17g04980.1                                                        57   9e-09
Glyma11g15300.1                                                        56   2e-08
Glyma03g03210.1                                                        52   6e-07
Glyma10g38830.1                                                        49   4e-06

>Glyma15g04920.1 
          Length = 349

 Score =  336 bits (862), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 165/182 (90%), Positives = 171/182 (93%)

Query: 10  GLPKSIANIFTARNIITAKDALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALL 69
           GLPKSI NIFTARNIITAKDALS T+FELMELLDVG  EVTSAMAH+SEVVCPPCQTALL
Sbjct: 1   GLPKSIVNIFTARNIITAKDALSHTEFELMELLDVGKEEVTSAMAHVSEVVCPPCQTALL 60

Query: 70  LMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMP 129
           L+EQRV NESLAGHL TRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLAS+P
Sbjct: 61  LLEQRVLNESLAGHLSTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASLP 120

Query: 130 ASCGGLDGRVIYIDVESKFSSKRLIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEF 189
            +CGGLDGRVIYIDVESKF SKRLIEIG+ SFPEIF KKGMAQEMAGRILIL PTSLSEF
Sbjct: 121 TNCGGLDGRVIYIDVESKFRSKRLIEIGINSFPEIFLKKGMAQEMAGRILILHPTSLSEF 180

Query: 190 AE 191
           AE
Sbjct: 181 AE 182


>Glyma13g40480.1 
          Length = 90

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 27  AKDALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPT 86
           ++DALS T+FE MELLDVG  EVTSAMAH S +VCPPCQT LL +   +           
Sbjct: 1   SQDALSHTEFEFMELLDVGKEEVTSAMAHASGIVCPPCQTKLLNLVVILYMRYFCWSSEY 60

Query: 87  RLKGLDEALCGGIPFGVLTELVGPAGIGKTQ 117
            +  LDE LC GIPFGVLTELVGPAGIGKTQ
Sbjct: 61  AMS-LDEVLCCGIPFGVLTELVGPAGIGKTQ 90


>Glyma18g52510.1 
          Length = 288

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 39/63 (61%)

Query: 91  LDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSS 150
           LD  L GG+P   +TE VG +G GKTQ CL+L+L A +P S GGL    I+I  E  F  
Sbjct: 23  LDRCLAGGVPCASVTEFVGESGCGKTQLCLQLALSAQLPPSHGGLSASSIFIHTEFPFPF 82

Query: 151 KRL 153
           +RL
Sbjct: 83  RRL 85


>Glyma13g17530.1 
          Length = 344

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%)

Query: 83  HLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYI 142
            + T  + LD+ L GG+  G +TEL G    GKTQ C  L +   +P   GG +G+ +YI
Sbjct: 106 QITTGSRELDKILEGGVETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 165

Query: 143 DVESKFSSKRLIEI 156
           D E  F  +RL++I
Sbjct: 166 DAEGTFRPQRLLQI 179


>Glyma17g04980.1 
          Length = 343

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query: 91  LDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSS 150
           LD+ L GG+  G +TEL G    GKTQ C  L +   +P   GG +G+ +YID E  F  
Sbjct: 113 LDKILEGGVETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP 172

Query: 151 KRLIEI 156
           +RL++I
Sbjct: 173 QRLLQI 178


>Glyma11g15300.1 
          Length = 321

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 15/150 (10%)

Query: 31  LSLTD-FELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLK 89
           LS TD     + L  G+ ++ S    I + + PP    L L+E   RN+ +   L T  +
Sbjct: 42  LSFTDNHSTSQTLKQGIDQLIS----IIDALHPPLLNGLQLLEDAQRNKHV---LSTGCE 94

Query: 90  GLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFS 149
           G+D  L GG+  G LTELVG +  GKTQ C     L S           VIY+D  + FS
Sbjct: 95  GIDALLRGGLREGQLTELVGSSSSGKTQAC-----LLSASTVVAKHKSSVIYLDTGNSFS 149

Query: 150 SKRLIEIGLKSFPEIFHKKGMAQEMAGRIL 179
            +R+     +S   IF  +  A  M  ++L
Sbjct: 150 PQRIAHFVGQSSGHIFGNQ--ADHMLKKVL 177


>Glyma03g03210.1 
          Length = 368

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query: 75  VRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGG 134
           + +E  + ++ T    LD  L GGI    +TE+ G  GIGKTQ  ++L++   +P   GG
Sbjct: 117 LNDEKFSSYITTSCADLDNILGGGIKCKEVTEIGGVPGIGKTQIGIQLAVNVQIPQEYGG 176

Query: 135 LDGRVIYI 142
           L G+ IYI
Sbjct: 177 LGGKAIYI 184


>Glyma10g38830.1 
          Length = 335

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%)

Query: 83  HLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYI 142
            + T  + LDE L GG+    +TE  G    GKTQ    L +   +P +  G +G+V YI
Sbjct: 108 RITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYI 167

Query: 143 DVESKFSSKRLIEI 156
           D E  F   R++ I
Sbjct: 168 DTEGTFRPDRIVPI 181