Miyakogusa Predicted Gene

Lj0g3v0256559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256559.1 Non Chatacterized Hit- tr|D7SJJ1|D7SJJ1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,54.35,9e-18,Homeodomain-like,Homeodomain-like; HTH_MYB,Myb domain;
TELOMERIC REPEAT BINDING PROTEIN 1,NULL; TELO,CUFF.16858.1
         (336 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g24730.1                                                       119   5e-27
Glyma04g18440.1                                                       107   2e-23
Glyma18g05900.1                                                        93   3e-19
Glyma08g05240.1                                                        91   2e-18
Glyma11g30730.1                                                        88   1e-17
Glyma11g30740.1                                                        75   1e-13
Glyma07g00930.1                                                        53   4e-07
Glyma08g20270.2                                                        53   5e-07
Glyma04g18430.1                                                        53   6e-07
Glyma08g20270.1                                                        52   7e-07

>Glyma06g24730.1 
          Length = 475

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 23/215 (10%)

Query: 17  IPNSTILRVLVRTLAVAPKMD--SSYFKTMILGMLQECCWSVSXXXXXXXXXXXXXR--- 71
           +P++ I +V++    + P  D  S   KT++L  LQ+  ++VS                 
Sbjct: 5   VPSNLIKKVIL----IVPLSDFYSRLKKTLLLRALQDHLFAVSVPESVLETLEQVEELHR 60

Query: 72  -SLDHEGSPI--SAAFRAAYCTVAVECTLKYLEVDL-SSPKYIDAVQRIWSGRVRQMRPS 127
              D +G+ +  S+A  AAYC VAVECTLK+L ++L ++P Y+ AV RIW GRVR M  S
Sbjct: 61  LGDDDDGALVTTSSAMSAAYCAVAVECTLKHLLLELHNNPAYLGAVNRIWRGRVRLM--S 118

Query: 128 SGGESQCPLFSEELERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLKIFLAESWDNFD 187
             GE    L S ELERW T+IEASL+D+ +R+RLA++ +TR  A+ KL+ +L E+W +  
Sbjct: 119 GSGEGSL-LLSPELERWRTDIEASLLDSSVRERLASI-DTRRDAVFKLRDYLKEAWTDLG 176

Query: 188 PSFLEQLAGENDVFLSNVAKGWCLPPQGQKEQQKE 222
           PSFLE+ A      L+++          +  QQ E
Sbjct: 177 PSFLERAA------LAHINNNALAANHSEDSQQPE 205



 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 66/98 (67%), Gaps = 5/98 (5%)

Query: 236 EWKKFVNRSCSGTS-YGTL--LPSPKMKKVSPLKEYDDSTNVIKKRRITKRWCQLEKETL 292
           EW   ++    GTS + T   LPSPK +KVSPL +Y  +   I KRR  K+W QLE+ETL
Sbjct: 379 EWDDSIDGLEDGTSDHATRFNLPSPKGRKVSPLNKYKPAN--ITKRRKVKKWSQLEEETL 436

Query: 293 LAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
              V+KFG GNW  IL +HKD+F+ RT VDLKDKWRNM
Sbjct: 437 RTAVDKFGRGNWKLILDSHKDIFEERTEVDLKDKWRNM 474


>Glyma04g18440.1 
          Length = 310

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 153/278 (55%), Gaps = 17/278 (6%)

Query: 3   GDAGSWAVEFI-RGRIP--NSTILRVLVRTLAVAPKMDSSYFKTMILGMLQECCWSVSX- 58
           GD G W +EF+ R R P  +S +L+ ++R + ++   DS   KT++L  LQ+  ++VS  
Sbjct: 4   GDVGHWVLEFLLRARYPVVSSNLLKKVLRIVPLS-DFDSRLQKTLLLRTLQDHLFAVSVP 62

Query: 59  XXXXXXXXXXXXRSLDHEGSPISAAFRAAYCT-VAVECTLKYLEVDL-SSPKYIDAVQRI 116
                            +G+ I+AA  +A    +AV+CTLK+L V+L ++P Y+ AV RI
Sbjct: 63  ESVLETLELLEELHRRDDGALITAAAMSAAYCAIAVDCTLKHLLVELHNNPAYLGAVNRI 122

Query: 117 WSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLK 176
           W GRVR M   SG      L S ELERW T+IE SL+D+ +R+RLA++ +TR  A+ KL+
Sbjct: 123 WRGRVRHM---SGSREGSLLLSLELERWRTDIETSLLDSLVRERLASI-DTRRDAVVKLR 178

Query: 177 IFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQG-QKEQQKETANVGDRSPTTAD 235
            +L E+W +  PSFLE LA    +  + +A  +    Q  ++E +K TA   +   T+ D
Sbjct: 179 DYLMEAWTDLGPSFLE-LAALAQINKNALAVNYLEDSQQPEREIEKCTAAPAEEVHTSTD 237

Query: 236 EWKKFVNRSCS----GTSYGTLLPSPKMKKVSPLKEYD 269
              + V    S      +  +LL S ++ + +P++  D
Sbjct: 238 AEVQKVGECGSVELQKLAEDSLLNSLEVNEEAPIESRD 275


>Glyma18g05900.1 
          Length = 468

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 29/205 (14%)

Query: 1   MDGDAGSWAVEFI-RGRIPNSTILRVLVR-TLAVA-PKMDSSYFKTMILGMLQECCWSVS 57
           M+ D   W +EF+ R  +P+S I + L    L+ A P++  +     +  +L+    S +
Sbjct: 1   MNSDISRWVMEFLLRSSVPDSLIQKTLTALPLSPAEPRLKKNLLLRTLQTLLRRATLSET 60

Query: 58  XXXXXXXXXXXXXRSLD--HEGSPISAAFRAAYCTVAVECTLKYLEV--DLSSPKYIDAV 113
                         +LD   + +P+S A R AYC VAVECT+KYL    D+   +Y  AV
Sbjct: 61  --------------ALDILEDLAPVSDAQRRAYCAVAVECTVKYLAACPDVIDGEYAGAV 106

Query: 114 QRIWSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDT--CIRDRLAALKNTRVVA 171
           +RIW GRV  ++    G     L S EL RW  EIE +L +     R+RLA L N+R  A
Sbjct: 107 RRIWRGRVAALQARRSG-----LVSGELVRWRDEIENALGEDSRAARERLAGL-NSRRDA 160

Query: 172 IQKLKIFLAESWDNFDPSFLEQLAG 196
           + +++++L E+W+   PSFLE +A 
Sbjct: 161 MNEVRVYLKEAWEMMGPSFLETVAA 185



 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query: 269 DDSTNVIKKRRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWR 328
           D+S    + RR  ++W  LE+ETL AGV  FGEGNW  I S + ++F+ R+ VDLKDKWR
Sbjct: 405 DNSQQARQPRRRKRKWSSLEEETLRAGVKMFGEGNWATIRSFYSNIFENRSGVDLKDKWR 464

Query: 329 NM 330
           NM
Sbjct: 465 NM 466


>Glyma08g05240.1 
          Length = 256

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 5/104 (4%)

Query: 230 SPTTADEWKKFVNRSCSGTSYGTL---LPSPKMKKVSPLKEYDDSTNVIKKRRITKRWCQ 286
           S T   EW   ++    GTS   +   LPSPK  KVSPL +Y  +   I + R TKRW Q
Sbjct: 149 STTPISEWNDSIDGLEGGTSDHAIRCHLPSPKGTKVSPLTKYKPTK--ITRSRKTKRWSQ 206

Query: 287 LEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
           LE+ET    V+KFG G W  +L ++KD+FK RT VDL DKWR+M
Sbjct: 207 LEEETRKTAVDKFGRGKWKLMLDSNKDIFKERTEVDLNDKWRSM 250


>Glyma11g30730.1 
          Length = 221

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 95/202 (47%), Gaps = 18/202 (8%)

Query: 1   MDGDAGSWAVEFI-RGRIPNSTILRVLVRTLAVAPKMDSSYFKTMILGMLQECCWSVSXX 59
           MD D   W  EF+ R  +P+S I +    TLA  P   +S      L +           
Sbjct: 1   MDSDISQWVTEFLLRSSVPDSLIQK----TLAALPLSTASPRLKKTLLLRTL---QTLLR 53

Query: 60  XXXXXXXXXXXRSLDHEGSPISAAFRAAYCTVAVECTLKYLEV---DLSSPKYIDAVQRI 116
                        L    +P+S A R AYC VAVECT+KYL     D+   +Y  AV+RI
Sbjct: 54  TATLSETALDILELLEPSAPVSDAHRRAYCAVAVECTVKYLAACPEDIDG-EYAGAVRRI 112

Query: 117 WSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLK 176
           W GRV  ++          L S EL RW   +E +  D+  R RL  L N+R  A+++++
Sbjct: 113 WRGRVSALKA-----RWSRLVSGELARWRDVVEDAFGDSRARQRLVGL-NSRRDAMKEVR 166

Query: 177 IFLAESWDNFDPSFLEQLAGEN 198
           +FL E+W    PSFLE +A + 
Sbjct: 167 VFLKEAWGAMGPSFLETVAAKE 188


>Glyma11g30740.1 
          Length = 220

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 43/62 (69%)

Query: 269 DDSTNVIKKRRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWR 328
           D+S    + RR  ++W  LE+ETL AGV  FGEGNW  I S + +VF+ R+ VDLKDKWR
Sbjct: 157 DNSPQARQPRRRKRKWSSLEEETLRAGVKMFGEGNWASIRSFYSNVFENRSGVDLKDKWR 216

Query: 329 NM 330
           NM
Sbjct: 217 NM 218


>Glyma07g00930.1 
          Length = 285

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 282 KRWCQLEKETLLAGVNKFGEGNWTFILSTHK--DVFKGRTSVDLKDKWRNMNLHTG 335
           ++W Q E++ L+AGV K G G W  IL   +       R+++DLKDKWRN+++  G
Sbjct: 6   QKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNG 61


>Glyma08g20270.2 
          Length = 252

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 282 KRWCQLEKETLLAGVNKFGEGNWTFILSTHK--DVFKGRTSVDLKDKWRNMNLHTG 335
           ++W Q E++ L+AGV K G G W  IL   +       R+++DLKDKWRN+++  G
Sbjct: 6   QKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNG 61


>Glyma04g18430.1 
          Length = 32

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/31 (70%), Positives = 25/31 (80%)

Query: 300 GEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
           G GNW  IL +HKD+F+ RT VDLKDKWRNM
Sbjct: 1   GRGNWKLILDSHKDIFEERTEVDLKDKWRNM 31


>Glyma08g20270.1 
          Length = 281

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 282 KRWCQLEKETLLAGVNKFGEGNWTFILSTHK--DVFKGRTSVDLKDKWRNMNLHTG 335
           ++W Q E++ L+AGV K G G W  IL   +       R+++DLKDKWRN+++  G
Sbjct: 6   QKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNG 61