Miyakogusa Predicted Gene
- Lj0g3v0254499.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0254499.1 Non Chatacterized Hit- tr|A3AP47|A3AP47_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,50,3e-19,Retrovirus zinc finger-like domains,Zinc finger,
CCHC-type; zinc finger,Zinc finger, CCHC-type; zf-C,CUFF.16777.1
(170 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma04g01070.2 279 1e-75
Glyma04g01070.1 279 1e-75
Glyma06g01090.1 279 1e-75
Glyma13g15790.1 47 8e-06
>Glyma04g01070.2
Length = 254
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/170 (84%), Positives = 145/170 (85%), Gaps = 7/170 (4%)
Query: 1 MASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCR 60
MASSCPNEGICHTCGK GHRARECSAPPMPPGDLRLCNNCYKQGHIA ECTNEKACNNCR
Sbjct: 92 MASSCPNEGICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCR 151
Query: 61 KTGHLARDCPNDPICNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYRDVV 120
KTGHLARDCPNDPICNLCNVSGHVARQCPK+N+LGDRS YRDVV
Sbjct: 152 KTGHLARDCPNDPICNLCNVSGHVARQCPKANVLGDRSG----GGGGARGGGGGGYRDVV 207
Query: 121 CRKCQQLGQMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYAPNTRRY 170
CR CQQLG MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRY RRY
Sbjct: 208 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYP---RRY 254
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 8 EGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCRKTGHLAR 67
+ +C C + GH AREC ++ +C+NC GHIA ECT + C NC++ GH+A
Sbjct: 42 DNLCKNCKRPGHYARECP-------NVAICHNCGLPGHIASECTTKSLCWNCKEPGHMAS 94
Query: 68 DCPNDPICNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYRDVVCRKCQQL 127
CPN+ IC+ C +GH AR+C + + + C C++
Sbjct: 95 SCPNEGICHTCGKAGHRAREC-SAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKT 153
Query: 128 GQMSRDCMGPLMICHNCGGRGHLAYECPSGRFM 160
G ++RDC IC+ C GH+A +CP +
Sbjct: 154 GHLARDCPNDP-ICNLCNVSGHVARQCPKANVL 185
>Glyma04g01070.1
Length = 254
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/170 (84%), Positives = 145/170 (85%), Gaps = 7/170 (4%)
Query: 1 MASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCR 60
MASSCPNEGICHTCGK GHRARECSAPPMPPGDLRLCNNCYKQGHIA ECTNEKACNNCR
Sbjct: 92 MASSCPNEGICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCR 151
Query: 61 KTGHLARDCPNDPICNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYRDVV 120
KTGHLARDCPNDPICNLCNVSGHVARQCPK+N+LGDRS YRDVV
Sbjct: 152 KTGHLARDCPNDPICNLCNVSGHVARQCPKANVLGDRSG----GGGGARGGGGGGYRDVV 207
Query: 121 CRKCQQLGQMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYAPNTRRY 170
CR CQQLG MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRY RRY
Sbjct: 208 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYP---RRY 254
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 8 EGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCRKTGHLAR 67
+ +C C + GH AREC ++ +C+NC GHIA ECT + C NC++ GH+A
Sbjct: 42 DNLCKNCKRPGHYARECP-------NVAICHNCGLPGHIASECTTKSLCWNCKEPGHMAS 94
Query: 68 DCPNDPICNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYRDVVCRKCQQL 127
CPN+ IC+ C +GH AR+C + + + C C++
Sbjct: 95 SCPNEGICHTCGKAGHRAREC-SAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKT 153
Query: 128 GQMSRDCMGPLMICHNCGGRGHLAYECPSGRFM 160
G ++RDC IC+ C GH+A +CP +
Sbjct: 154 GHLARDCPNDP-ICNLCNVSGHVARQCPKANVL 185
>Glyma06g01090.1
Length = 259
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/170 (84%), Positives = 145/170 (85%), Gaps = 4/170 (2%)
Query: 1 MASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCR 60
MASSCPNEGICHTCGK GHRARECSAPPMPPGDLRLCNNCYKQGHIA ECTNEKACNNCR
Sbjct: 94 MASSCPNEGICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCR 153
Query: 61 KTGHLARDCPNDPICNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYRDVV 120
KTGHLARDCPNDPICNLCNVSGHVARQCPK+N+LGDRS YRDVV
Sbjct: 154 KTGHLARDCPNDPICNLCNVSGHVARQCPKANVLGDRSG-GGGGGGGARGGGGGGYRDVV 212
Query: 121 CRKCQQLGQMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYAPNTRRY 170
CR CQQLG MSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRY RRY
Sbjct: 213 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYP---RRY 259
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 8 EGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCRKTGHLAR 67
+ +C C + GH AREC ++ +C+NC GHIA ECT + C NC++ GH+A
Sbjct: 44 DNLCKNCKRPGHYARECP-------NVAICHNCGLPGHIASECTTKSLCWNCKEPGHMAS 96
Query: 68 DCPNDPICNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYRDVVCRKCQQL 127
CPN+ IC+ C +GH AR+C + + + C C++
Sbjct: 97 SCPNEGICHTCGKAGHRAREC-SAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKT 155
Query: 128 GQMSRDCMGPLMICHNCGGRGHLAYECPSGRFM 160
G ++RDC IC+ C GH+A +CP +
Sbjct: 156 GHLARDCPNDP-ICNLCNVSGHVARQCPKANVL 187
>Glyma13g15790.1
Length = 529
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 9 GICHTCGKVGHRARECSAPPMPPGDLRLCNNCYK---QGHIAVECTNEKACNNCRKTGHL 65
G C CG+ GH A CSA ++ CY GH A +C+ + C C+K GH
Sbjct: 161 GACFNCGEEGHAAVNCSA-------VKRKKPCYVCGCLGHNARQCSKVQDCFICKKGGHR 213
Query: 66 ARDCPND--------PICNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYR 117
A+DCP IC C SGH C D +
Sbjct: 214 AKDCPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDD-------------------LK 254
Query: 118 DVVCRKCQQLGQM----SRDCMGPLMICHNCGGRGHLAYEC 154
++ C C++LG + + D + C+ CG GH+ C
Sbjct: 255 EIQCYVCKRLGHLCCVNTDDATAGEISCYKCGQLGHMGLAC 295