Miyakogusa Predicted Gene

Lj0g3v0250649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250649.1 tr|B9GNP6|B9GNP6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_551783 PE=4 SV=1,37.96,0.0000004,
,CUFF.16413.1
         (345 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g39300.1                                                       103   2e-22
Glyma11g27510.1                                                        60   3e-09

>Glyma02g39300.1 
          Length = 926

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 68/107 (63%), Gaps = 9/107 (8%)

Query: 239 IQENLPESEKEMSIHDAGEAIPVANNGKQSKKRRPRDSIVWRPLILSEPEFCPEVITQYA 298
           +QE +PE         AGE +P A+   + +KRR   SI W+ L L   EFCP+VI +Y 
Sbjct: 258 VQEIMPE---------AGEVMPGASRCAKKRKRRRTASICWKRLELRNAEFCPDVINEYI 308

Query: 299 LGSKSRKTRETLKTKVRKHLAFLGWTIEWTENKQFTDRRRYRYKSPE 345
            G  S+  RE LKTKVRKHLA+LGW IEW E+K F  R RYRYKSP+
Sbjct: 309 RGCGSKTVRELLKTKVRKHLAYLGWKIEWAEDKYFPGRGRYRYKSPD 355


>Glyma11g27510.1 
          Length = 1253

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 215 PQSQKEMSIDDLGEGISGAKIGEQ------IQENLPESEKEMSIHDAGEAIPVANNGKQS 268
           P+S + M+  DL       +I  Q      ++E LP+ +KE+    A  +       +++
Sbjct: 254 PESVEAMASVDLSVTFPDKEIVVQKEPVPPVKEVLPKLQKEIGPCGAFWS----EESREN 309

Query: 269 KKRRPRDSIVWRPLILSEPEFCPEVITQYALGSKSRKTRETLKTKVRKHLAFLGWTIEWT 328
           K      S  W+PL LSE   CP+ + +Y L + +R  +     K++KHL  LGW IEW+
Sbjct: 310 KSSTHLRSHYWKPLKLSEVALCPDAVREYLL-APNRADKALWMEKLQKHLVCLGWKIEWS 368

Query: 329 ENKQFTDRRRYRYKSPE 345
                   +RYRY  P+
Sbjct: 369 NKNNI---KRYRYNVPD 382