Miyakogusa Predicted Gene

Lj0g3v0250599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0250599.1 tr|B9HBK0|B9HBK0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_560743 PE=4 SV=1,64.79,7e-17,GB
DEF: T22K18.10 PROTEIN (TAF12) (PUTATIVE TBP-ASSOCIATED 58 KDA SUBUNIT
PROTEIN),NULL; FAMILY NOT ,CUFF.16407.1
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g21950.1                                                        91   3e-19
Glyma10g08250.1                                                        80   3e-16

>Glyma13g21950.1 
          Length = 507

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 49/72 (68%)

Query: 1   MTLPGFGGDEIKSYKRPVQSEIHKERLAAIKKSLLAAEAAHXXXXXXXXXXXXXXXXXXP 60
           MTLPGFGGDEIKSY+RP+ S+IHKERLA IKKS+ + EAAH                   
Sbjct: 435 MTLPGFGGDEIKSYRRPITSDIHKERLAVIKKSMASTEAAHGKGSAGQASGSAKGNQGKT 494

Query: 61  PLNIIGSPNLKN 72
           PLNIIGSPNLKN
Sbjct: 495 PLNIIGSPNLKN 506


>Glyma10g08250.1 
          Length = 507

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 45/72 (62%)

Query: 1   MTLPGFGGDEIKSYKRPVQSEIHKERLAAIKKSLLAAEAAHXXXXXXXXXXXXXXXXXXP 60
           MTL GFGGD+IKSY+RP  S+IHKERL  IKKS+ A EAAH                   
Sbjct: 435 MTLLGFGGDDIKSYRRPTTSDIHKERLTVIKKSMAATEAAHGKGSAGQASGSAKGNQGKT 494

Query: 61  PLNIIGSPNLKN 72
           PLNIIG PNLKN
Sbjct: 495 PLNIIGLPNLKN 506