Miyakogusa Predicted Gene

Lj0g3v0249659.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0249659.1 Non Chatacterized Hit- tr|D7MDR2|D7MDR2_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,33.51,3e-17,seg,NULL,CUFF.16330.1
         (211 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g41360.1                                                        87   1e-17
Glyma06g13490.1                                                        69   3e-12

>Glyma04g41360.1 
          Length = 215

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 75/171 (43%), Gaps = 33/171 (19%)

Query: 41  KSQTLAFLHRIRSSLTETLHPLKDXXXXXXXXXXXXXXXXQTQFDLILREILHLDDGSTR 100
           KSQTL FLHRIRSS  +TL P  +                Q+QF  I +  LH ++ S +
Sbjct: 78  KSQTLPFLHRIRSSFRQTLPPTNNHHFAPLSF--------QSQFHTIFQNALHDNNRSQQ 129

Query: 101 SPPPAVVGVPHGEGLKKKKRVVDSAAVAANGTDAKDRDLTTAAAMVDVNDDLVSLPAGGT 160
              P+    P  +GLKKKKR  D                  A A +DV+DD VSL     
Sbjct: 130 QQQPSPPLNPPAQGLKKKKRPND------------------APATLDVSDDAVSLK---- 167

Query: 161 KGVPGXXXXXXXXXXXXXXXXXXXXXXXXFVCAVLFVIWLWVCSGFKCMTY 211
              P                         FVCAVLFVIWLWVCSGFKCM Y
Sbjct: 168 ---PQLHNHSNKAKHVWKKHVWVLLLLDLFVCAVLFVIWLWVCSGFKCMAY 215


>Glyma06g13490.1 
          Length = 234

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 71/177 (40%), Gaps = 33/177 (18%)

Query: 41  KSQTLAFLHRIRSSLTETLHPLKDXXXXXXXXXXXXXXXXQTQFDLILREILHLDDGSTR 100
           KSQTL FLH IRSS  +TL P  +                Q+QF  I +  LH       
Sbjct: 85  KSQTLPFLHCIRSSFRQTLPPSSNNNHHFAPLSF------QSQFTSIFQNALHHHHHHHH 138

Query: 101 SPPPA------VVGVPHGEGLKKKKRVVDSAAVAANGTDAKDRDLTTAAAMVDVNDDLVS 154
               A          P  +GLKKKKR  D     A GT             +DV+DD+VS
Sbjct: 139 HQLQASPPPPPPPLNPPPQGLKKKKRPND-----APGT-------------LDVSDDVVS 180

Query: 155 LPAGGTKGVPGXXXXXXXXXXXXXXXXXXXXXXXXFVCAVLFVIWLWVCSGFKCMTY 211
           L        P                         FVCAVLFVIWLWVCSGFKCM Y
Sbjct: 181 LKPHHQ---PLNYNHSNKAKHVWKKHVWVLLILDLFVCAVLFVIWLWVCSGFKCMAY 234