Miyakogusa Predicted Gene

Lj0g3v0248159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0248159.1 Non Chatacterized Hit- tr|B8BNV9|B8BNV9_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,40.87,0.00000000000001,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.16226.1
         (239 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g02790.1                                                       323   7e-89

>Glyma19g02790.1 
          Length = 356

 Score =  323 bits (829), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 170/228 (74%), Positives = 194/228 (85%), Gaps = 17/228 (7%)

Query: 26  QSPLDAFWLEINERPLKRSLLDFGNLSIS-DSAQKVEFNNKKVFVQRVETISSSEVTLDI 84
           QSPLDAFWLEINERPLKR LLDFGNLSIS +SAQKVEF NKKVFVQ VETISSSEVT DI
Sbjct: 25  QSPLDAFWLEINERPLKRPLLDFGNLSISSNSAQKVEFYNKKVFVQHVETISSSEVTFDI 84

Query: 85  VQSFVDPGSSRASESKSNIEQRKSFFKKDNRARKQDQLLSKAKQDKESLAKDARFEQIWK 144
           VQSFVD GSS AS+SKS I++RK FF +DN   KQDQLLSKAKQ+KESLAKDARFEQIWK
Sbjct: 85  VQSFVDLGSSGASDSKSKIKERKKFFNRDN---KQDQLLSKAKQEKESLAKDARFEQIWK 141

Query: 145 SRKGNKETEHEKALQEICNFYDIVRV-------EEQQKEMTLEDQILLSSYLPMLREFIP 197
           +RKGNK T H+KALQE+C+ YDIVR+       E QQ+EM+LEDQ LLSSYLP+LREFIP
Sbjct: 142 NRKGNKGTAHDKALQEMCHLYDIVRIDNEEKNKEVQQEEMSLEDQRLLSSYLPLLREFIP 201

Query: 198 DAASEIEADMVA----HSKKEDYVYDLYTVNDEVD--VEDSSYSYPLV 239
           +AA+E+E D++A    HSK+E+YVYDLYTV DE+D  ++DSS SYPLV
Sbjct: 202 NAAAEVETDLIAQLVGHSKEENYVYDLYTVKDEMDINIDDSSCSYPLV 249