Miyakogusa Predicted Gene

Lj0g3v0246539.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0246539.1 Non Chatacterized Hit- tr|D8TRD2|D8TRD2_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,40,7e-16,Pseudouridine synthase,Pseudouridine synthase, catalytic
domain; no description,Pseudouridine
syntha,NODE_50229_length_1121_cov_7.661909.path1.1
         (248 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma0448s00210.1                                                     329   2e-90
Glyma02g39970.1                                                       322   2e-88
Glyma02g39980.1                                                       262   2e-70
Glyma02g36350.1                                                        59   4e-09

>Glyma0448s00210.1 
          Length = 499

 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 154/202 (76%), Positives = 172/202 (85%)

Query: 47  NDFSHQNSSLVVRARWLYEPDEADRLNVSHFRKISQCSCGKLQRLLGKDYVEIKIWGDSF 106
           N FS QNS++VVRA+WLYEPDE DRLN SHFRK+ +CSCGKL+  LG DYVE+ +WGDSF
Sbjct: 298 NGFSSQNSTVVVRAKWLYEPDETDRLNASHFRKVFRCSCGKLETSLGYDYVEVHVWGDSF 357

Query: 107 MLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLILRGNTFSMRSSAGK 166
           MLHQIRKMVGTAVAVKRNLIPRD + LSL KF+RIV PLAPPEVLILRGN F MR+SAG 
Sbjct: 358 MLHQIRKMVGTAVAVKRNLIPRDAILLSLSKFSRIVFPLAPPEVLILRGNAFKMRASAGN 417

Query: 167 FIRPEMVSLVESEPILNEVEEFYTSVMLPELSKFLDSSKSPWVEWVERLDKYSSFADAEL 226
           F R EMVS+VESEPIL   +EFYTSV+LPE+SKFLDSS SPW +WVE LDKYSS  D EL
Sbjct: 418 FTRQEMVSMVESEPILKAADEFYTSVVLPEVSKFLDSSSSPWAKWVENLDKYSSIPDVEL 477

Query: 227 DEVRMAWRTWKENFRAKSASDA 248
           DEVR AW+TWKENFR KS S+A
Sbjct: 478 DEVRKAWKTWKENFRVKSESEA 499


>Glyma02g39970.1 
          Length = 494

 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/195 (77%), Positives = 168/195 (86%)

Query: 47  NDFSHQNSSLVVRARWLYEPDEADRLNVSHFRKISQCSCGKLQRLLGKDYVEIKIWGDSF 106
           N  S QNSS+VVRA+WLYEPDE DRLN SHFRK+ +CSCGKL+  LG DY+E+ IWGDSF
Sbjct: 269 NGLSSQNSSVVVRAKWLYEPDETDRLNASHFRKVFRCSCGKLETSLGYDYIEVHIWGDSF 328

Query: 107 MLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLILRGNTFSMRSSAGK 166
           MLHQIRKMVGTAVAVKRNLIPRD + LSL KF+RIVLPLAPPEVLILRGN F MR+SAG 
Sbjct: 329 MLHQIRKMVGTAVAVKRNLIPRDAILLSLSKFSRIVLPLAPPEVLILRGNAFKMRASAGN 388

Query: 167 FIRPEMVSLVESEPILNEVEEFYTSVMLPELSKFLDSSKSPWVEWVERLDKYSSFADAEL 226
           F R EMVS+VESE IL  V+EFYTSV+LPE+SKFLDSS SPW +WVE LDKYSS  DAEL
Sbjct: 389 FTRQEMVSMVESEQILEAVDEFYTSVVLPEVSKFLDSSNSPWAKWVENLDKYSSIPDAEL 448

Query: 227 DEVRMAWRTWKENFR 241
           DEVR AW+TWKENFR
Sbjct: 449 DEVRKAWKTWKENFR 463


>Glyma02g39980.1 
          Length = 425

 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 153/197 (77%)

Query: 47  NDFSHQNSSLVVRARWLYEPDEADRLNVSHFRKISQCSCGKLQRLLGKDYVEIKIWGDSF 106
           N    Q+S LV RARWLYEPDEADRL+ SHFRK+ QCSCGKL+  LG +Y+EI I G+SF
Sbjct: 221 NGLHDQDSRLVARARWLYEPDEADRLSASHFRKVFQCSCGKLETSLGYNYIEISIQGESF 280

Query: 107 MLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLILRGNTFSMRSSAGK 166
           MLHQIRKMVGTAVAVKR  +P+DI+ LSL +F+RI+LPLAP E LILRGN FS+R+  G 
Sbjct: 281 MLHQIRKMVGTAVAVKRKALPKDIIKLSLTRFSRIILPLAPSEALILRGNRFSIRTRPGN 340

Query: 167 FIRPEMVSLVESEPILNEVEEFYTSVMLPELSKFLDSSKSPWVEWVERLDKYSSFADAEL 226
             RPEM ++V+SE I   V++FYTSVMLP++SK LD S+SPW EW+E+LD ++S  + +L
Sbjct: 341 ITRPEMQTIVKSEEIKKAVDDFYTSVMLPQVSKLLDPSRSPWDEWIEKLDAHTSIPNDQL 400

Query: 227 DEVRMAWRTWKENFRAK 243
           DEVR AW    + F +K
Sbjct: 401 DEVRKAWNFEGKKFFSK 417


>Glyma02g36350.1 
          Length = 548

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 93  GKDYVEIKIWGDSFMLHQIRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLI 152
           G ++V+ ++ G SFMLHQIRKM+G AVA+ RN  P  ++  +L +   I +P AP   L 
Sbjct: 367 GVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIDEALQQDVNINVPTAPEVGLY 426

Query: 153 L 153
           L
Sbjct: 427 L 427