Miyakogusa Predicted Gene

Lj0g3v0245739.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0245739.1 tr|G7K3G7|G7K3G7_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_5g092100 PE=3 SV=1,86.21,0,DNA polymerase A
domain,DNA-directed DNA polymerase, family A, palm domain; DNAPOLI,DNA
polymerase A,CUFF.16062.1
         (174 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g45910.1                                                       314   3e-86
Glyma14g02860.1                                                       312   1e-85
Glyma02g25220.1                                                       306   7e-84
Glyma0364s00210.1                                                      99   2e-21

>Glyma02g45910.1 
          Length = 1077

 Score =  314 bits (804), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/174 (86%), Positives = 161/174 (92%)

Query: 1    MLNFSIAYGKTPIGLSKDWKVPVKDAKKTRDLWYNDRKEVLKWQEERKREACEYHCVYTL 60
            MLNFSIAYGKTP+GLSKDWKV VK+AKKT DLWYNDRKEVL+WQEERK+EA   HCVYTL
Sbjct: 904  MLNFSIAYGKTPVGLSKDWKVSVKEAKKTVDLWYNDRKEVLQWQEERKKEARVLHCVYTL 963

Query: 61   LGRARRFPSVDLATNYQKGHIERAAINTPVQGSAADVAMCAMLQIANHKQLKELGWKLLL 120
            LGRARRFP +  A  YQKGHIERAAINTPVQGSAADVAMCAMLQI+ +K+LKELGWKLLL
Sbjct: 964  LGRARRFPLMAQANTYQKGHIERAAINTPVQGSAADVAMCAMLQISKNKRLKELGWKLLL 1023

Query: 121  QVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVALSVDAKIAQNWYAGK 174
            QVHDEVILEGPTESAEVAK+IVVECMSKPFNGKNILKV LSVDAK AQNWY+GK
Sbjct: 1024 QVHDEVILEGPTESAEVAKSIVVECMSKPFNGKNILKVDLSVDAKCAQNWYSGK 1077


>Glyma14g02860.1 
          Length = 917

 Score =  312 bits (799), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/174 (86%), Positives = 161/174 (92%)

Query: 1   MLNFSIAYGKTPIGLSKDWKVPVKDAKKTRDLWYNDRKEVLKWQEERKREACEYHCVYTL 60
           MLNFSIAYGKTP+GLSKDWKV VK+AKKT DLWYNDRKEVL+WQEERK+EA   HCVYTL
Sbjct: 744 MLNFSIAYGKTPVGLSKDWKVSVKEAKKTVDLWYNDRKEVLQWQEERKKEARVLHCVYTL 803

Query: 61  LGRARRFPSVDLATNYQKGHIERAAINTPVQGSAADVAMCAMLQIANHKQLKELGWKLLL 120
           LGRARRFP +  A  YQKGHIERAAINTPVQGSAADVAMCAMLQI+ +K+LKELGWKLLL
Sbjct: 804 LGRARRFPLMAQANTYQKGHIERAAINTPVQGSAADVAMCAMLQISKNKRLKELGWKLLL 863

Query: 121 QVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVALSVDAKIAQNWYAGK 174
           QVHDEVILEGPTESAEVAK+IV+ECMSKPFNGKNILKV LSVDAK AQNWY+GK
Sbjct: 864 QVHDEVILEGPTESAEVAKSIVIECMSKPFNGKNILKVDLSVDAKCAQNWYSGK 917


>Glyma02g25220.1 
          Length = 174

 Score =  306 bits (784), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 144/174 (82%), Positives = 159/174 (91%)

Query: 1   MLNFSIAYGKTPIGLSKDWKVPVKDAKKTRDLWYNDRKEVLKWQEERKREACEYHCVYTL 60
           MLNFSIAYGKTP+GLSKDWKV V +A++T DLWYNDRKEVLKWQ+ERK+EACE   V+TL
Sbjct: 1   MLNFSIAYGKTPVGLSKDWKVTVTEARRTVDLWYNDRKEVLKWQKERKKEACESQRVHTL 60

Query: 61  LGRARRFPSVDLATNYQKGHIERAAINTPVQGSAADVAMCAMLQIANHKQLKELGWKLLL 120
           LGRARRFP +DLA NY KGHIERAAINTPVQGSAADVAMCAML+I+N+ +LKELGWKLLL
Sbjct: 61  LGRARRFPKIDLANNYHKGHIERAAINTPVQGSAADVAMCAMLEISNNMKLKELGWKLLL 120

Query: 121 QVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVALSVDAKIAQNWYAGK 174
           QVHDEVILEGPTESAEVAKAIVVECM+KPFNG+N L+V LSVDA  AQNWYA K
Sbjct: 121 QVHDEVILEGPTESAEVAKAIVVECMTKPFNGENFLRVGLSVDANCAQNWYAAK 174


>Glyma0364s00210.1 
          Length = 52

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/51 (92%), Positives = 49/51 (96%)

Query: 121 QVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVALSVDAKIAQNWY 171
           QVHDEVILEGPTESAEVAK+IV+ECMSKPFNGKNILKV LSVDAK AQNWY
Sbjct: 1   QVHDEVILEGPTESAEVAKSIVIECMSKPFNGKNILKVDLSVDAKCAQNWY 51