Miyakogusa Predicted Gene

Lj0g3v0243579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0243579.1 Non Chatacterized Hit- tr|F6HF07|F6HF07_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,82.98,3e-16,coiled-coil,NULL; TRANSCRIPTION INITIATION FACTOR IIE,
ALPHA SUBUNIT,NULL; no description,Winged hel,CUFF.15912.1
         (89 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g23400.1                                                       170   3e-43
Glyma18g23310.1                                                       169   6e-43
Glyma05g07910.1                                                       166   5e-42
Glyma17g13090.1                                                       161   1e-40

>Glyma06g23400.1 
          Length = 469

 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/89 (91%), Positives = 87/89 (97%)

Query: 1  MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKD 60
          M++ YNKLVKLAARAFYDDLTSKG+NQPKSGRSDNRGIAVV+LDALTRRQWVREEDLAKD
Sbjct: 1  MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKD 60

Query: 61 LKLHTKQLRRTLRFFEEEKIITRDHRREV 89
          LKLHTKQLRRTLRFFEEEKIITR++RRE 
Sbjct: 61 LKLHTKQLRRTLRFFEEEKIITREYRRET 89


>Glyma18g23310.1 
          Length = 292

 Score =  169 bits (428), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 81/89 (91%), Positives = 87/89 (97%)

Query: 1  MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKD 60
          M++ YNKLVKLAARAFYDDLTSKG+NQPKSGRSDNRGIAVV+LDALTRRQWVREEDLAKD
Sbjct: 1  MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKD 60

Query: 61 LKLHTKQLRRTLRFFEEEKIITRDHRREV 89
          LKLHTKQLRRTLRFFEEEKIITR++RRE 
Sbjct: 61 LKLHTKQLRRTLRFFEEEKIITREYRREA 89


>Glyma05g07910.1 
          Length = 465

 Score =  166 bits (420), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/83 (96%), Positives = 82/83 (98%)

Query: 7  KLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTK 66
          +LVKLAARAFYDDLTSKGDNQPK+GRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTK
Sbjct: 1  RLVKLAARAFYDDLTSKGDNQPKTGRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTK 60

Query: 67 QLRRTLRFFEEEKIITRDHRREV 89
          QLRRTLRFFEEEKIITRDHRRE 
Sbjct: 61 QLRRTLRFFEEEKIITRDHRRET 83


>Glyma17g13090.1 
          Length = 463

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/83 (92%), Positives = 80/83 (96%)

Query: 7  KLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTK 66
          +L+KL ARAFYDDLTS GDNQPK+GRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTK
Sbjct: 1  RLIKLGARAFYDDLTSTGDNQPKTGRSDNRGIAVVVLDALTRRQWVREEDLAKDLKLHTK 60

Query: 67 QLRRTLRFFEEEKIITRDHRREV 89
          QLRRTLRFFEEEKIITRDHRRE 
Sbjct: 61 QLRRTLRFFEEEKIITRDHRRET 83