Miyakogusa Predicted Gene

Lj0g3v0242879.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242879.2 tr|A9SSD6|A9SSD6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_134439,39.31,0.000000000000005,seg,NULL; eIF-4B,Plant
specific eukaryotic initiation factor 4B; coiled-coil,NULL; SUBFAMILY
NOT NAM,CUFF.16077.2
         (316 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g30790.1                                                       301   7e-82
Glyma05g30790.2                                                       300   1e-81
Glyma08g13980.2                                                       298   6e-81
Glyma08g13980.1                                                       298   7e-81
Glyma12g03400.1                                                        52   7e-07
Glyma11g11240.1                                                        52   9e-07

>Glyma05g30790.1 
          Length = 531

 Score =  301 bits (771), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 171/311 (54%), Positives = 194/311 (62%), Gaps = 17/311 (5%)

Query: 2   SGKKPLPSTAPPPARSSGY-SGFRDSGGXXXXXXXX---XXXXXXXXXXLVLDPRKGDGS 57
           +GKKP+P       RSS + SGFRDSG                      LVLDP +GDG 
Sbjct: 212 AGKKPVP------VRSSNFGSGFRDSGVEPDRWTRGGPPREVDRTERPRLVLDPPRGDGV 265

Query: 58  VNETPPAMTNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKAXXXXXXXXXXXXXXXX 117
           VNE+P   +NK +PFGAARPRE+VLA+KGLDWKK+DSEIE KK                 
Sbjct: 266 VNESPVKASNKANPFGAARPREQVLAEKGLDWKKMDSEIETKKTSRPPSSHSSRPSSAQS 325

Query: 118 X-------EGPDAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELERRGVDRPXXXX 170
                   +G DAV+K RPKVNPFG+AKPRE +L ERG DWRKIDLELE R VDRP    
Sbjct: 326 NRSEGPGLQGTDAVVKSRPKVNPFGDAKPREAVLGERGMDWRKIDLELEHRSVDRPETME 385

Query: 171 XXXXXXXXXXXXXXXXXXPKMNSNQESADEAGANQTGAHAXXXXXXXXXXXXIHDLDDKV 230
                               +NSN+ES DEAG +QT  HA            I DLDDKV
Sbjct: 386 EKLLKEEIDNLKKELEKESTINSNKESVDEAGGDQTSTHAILQQKEKELELLIRDLDDKV 445

Query: 231 RFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPSDDRR 290
           RFGQKA++RPGSSAG++   SDRP SRSGSFEDSRSVDF+DRPRSRGTGD WM PSDDRR
Sbjct: 446 RFGQKAIERPGSSAGKSSTFSDRPHSRSGSFEDSRSVDFTDRPRSRGTGDMWMHPSDDRR 505

Query: 291 QFQGSRERGFF 301
           QFQGSRERG+F
Sbjct: 506 QFQGSRERGWF 516


>Glyma05g30790.2 
          Length = 524

 Score =  300 bits (769), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/311 (54%), Positives = 194/311 (62%), Gaps = 17/311 (5%)

Query: 2   SGKKPLPSTAPPPARSSGY-SGFRDSGGXXXXXXXX---XXXXXXXXXXLVLDPRKGDGS 57
           +GKKP+P       RSS + SGFRDSG                      LVLDP +GDG 
Sbjct: 212 AGKKPVP------VRSSNFGSGFRDSGVEPDRWTRGGPPREVDRTERPRLVLDPPRGDGV 265

Query: 58  VNETPPAMTNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKAXXXXXXXXXXXXXXXX 117
           VNE+P   +NK +PFGAARPRE+VLA+KGLDWKK+DSEIE KK                 
Sbjct: 266 VNESPVKASNKANPFGAARPREQVLAEKGLDWKKMDSEIETKKTSRPPSSHSSRPSSAQS 325

Query: 118 X-------EGPDAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELERRGVDRPXXXX 170
                   +G DAV+K RPKVNPFG+AKPRE +L ERG DWRKIDLELE R VDRP    
Sbjct: 326 NRSEGPGLQGTDAVVKSRPKVNPFGDAKPREAVLGERGMDWRKIDLELEHRSVDRPETME 385

Query: 171 XXXXXXXXXXXXXXXXXXPKMNSNQESADEAGANQTGAHAXXXXXXXXXXXXIHDLDDKV 230
                               +NSN+ES DEAG +QT  HA            I DLDDKV
Sbjct: 386 EKLLKEEIDNLKKELEKESTINSNKESVDEAGGDQTSTHAILQQKEKELELLIRDLDDKV 445

Query: 231 RFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPSDDRR 290
           RFGQKA++RPGSSAG++   SDRP SRSGSFEDSRSVDF+DRPRSRGTGD WM PSDDRR
Sbjct: 446 RFGQKAIERPGSSAGKSSTFSDRPHSRSGSFEDSRSVDFTDRPRSRGTGDMWMHPSDDRR 505

Query: 291 QFQGSRERGFF 301
           QFQGSRERG+F
Sbjct: 506 QFQGSRERGWF 516


>Glyma08g13980.2 
          Length = 544

 Score =  298 bits (762), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 173/303 (57%), Positives = 190/303 (62%), Gaps = 13/303 (4%)

Query: 12  PPPARSSGY-SGFRDSGGXXXXXXX----XXXXXXXXXXXLVLDPRKGDGSVNETPPAMT 66
           P P RSS + S FRDSG                       LVLDP +GDG VNE+P    
Sbjct: 235 PAPVRSSNFGSSFRDSGVEPDRWTRGDPPREVEQRTERPRLVLDPPRGDGLVNESPVKAM 294

Query: 67  NKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKAX--XXXXXXXXXXXXXXXXEGP--- 121
           +K +PFGAARPREEVLA+KGLDWKKLDSEIE KK                    EGP   
Sbjct: 295 DKANPFGAARPREEVLAEKGLDWKKLDSEIETKKTSRPTSSHSSRPSSAQSNRSEGPGLQ 354

Query: 122 --DAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELERRGVDRPXXXXXXXXXXXXX 179
             DAV+K RPKVNPFG+AKPRE +L ERG DWRKIDLELERR V RP             
Sbjct: 355 GTDAVVKSRPKVNPFGDAKPREAVLGERGMDWRKIDLELERRSVARPETMEEKLLKEEID 414

Query: 180 XXXXXXXXXPKMNSNQESADEAGANQTGAHAXXXXXXXXXXXXIHDLDDKVRFGQKAVDR 239
                      +NSN+ES DEAG +QT  HA            IHDLD KVRFGQKAV+R
Sbjct: 415 NLKKELEKESTINSNKESVDEAGGDQTSRHAILQQKEKELELLIHDLDGKVRFGQKAVER 474

Query: 240 PGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPSDDRRQFQ-GSRER 298
           PGSSAG++   SDRPPSRSGSFEDSRSVDF+DRPRSRGTGD WMRPSDDRRQFQ GSRER
Sbjct: 475 PGSSAGKSSTFSDRPPSRSGSFEDSRSVDFTDRPRSRGTGDMWMRPSDDRRQFQGGSRER 534

Query: 299 GFF 301
           G+F
Sbjct: 535 GWF 537


>Glyma08g13980.1 
          Length = 551

 Score =  298 bits (762), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 173/303 (57%), Positives = 190/303 (62%), Gaps = 13/303 (4%)

Query: 12  PPPARSSGY-SGFRDSGGXXXXXXX----XXXXXXXXXXXLVLDPRKGDGSVNETPPAMT 66
           P P RSS + S FRDSG                       LVLDP +GDG VNE+P    
Sbjct: 235 PAPVRSSNFGSSFRDSGVEPDRWTRGDPPREVEQRTERPRLVLDPPRGDGLVNESPVKAM 294

Query: 67  NKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKAX--XXXXXXXXXXXXXXXXEGP--- 121
           +K +PFGAARPREEVLA+KGLDWKKLDSEIE KK                    EGP   
Sbjct: 295 DKANPFGAARPREEVLAEKGLDWKKLDSEIETKKTSRPTSSHSSRPSSAQSNRSEGPGLQ 354

Query: 122 --DAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELERRGVDRPXXXXXXXXXXXXX 179
             DAV+K RPKVNPFG+AKPRE +L ERG DWRKIDLELERR V RP             
Sbjct: 355 GTDAVVKSRPKVNPFGDAKPREAVLGERGMDWRKIDLELERRSVARPETMEEKLLKEEID 414

Query: 180 XXXXXXXXXPKMNSNQESADEAGANQTGAHAXXXXXXXXXXXXIHDLDDKVRFGQKAVDR 239
                      +NSN+ES DEAG +QT  HA            IHDLD KVRFGQKAV+R
Sbjct: 415 NLKKELEKESTINSNKESVDEAGGDQTSRHAILQQKEKELELLIHDLDGKVRFGQKAVER 474

Query: 240 PGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPSDDRRQFQ-GSRER 298
           PGSSAG++   SDRPPSRSGSFEDSRSVDF+DRPRSRGTGD WMRPSDDRRQFQ GSRER
Sbjct: 475 PGSSAGKSSTFSDRPPSRSGSFEDSRSVDFTDRPRSRGTGDMWMRPSDDRRQFQGGSRER 534

Query: 299 GFF 301
           G+F
Sbjct: 535 GWF 537


>Glyma12g03400.1 
          Length = 380

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 119 EGPDAVLKPRPK-VNPFGEAKPREVLLAERGADWRKIDLELE 159
           EG D     +PK VNPFGEA+PRE +LAE+G DW+KID +LE
Sbjct: 266 EGVDGNNAGKPKGVNPFGEARPREQVLAEKGQDWKKIDEQLE 307



 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 47  LVLDPRK---GDGSVNETPPAMTNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKK 100
           LVL PR     D  V+          +PFG ARPRE+VLA+KG DWKK+D ++E+ K
Sbjct: 254 LVLQPRTVSVSDEGVDGNNAGKPKGVNPFGEARPREQVLAEKGQDWKKIDEQLESVK 310


>Glyma11g11240.1 
          Length = 377

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%), Gaps = 1/38 (2%)

Query: 122 DAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELE 159
           D V KP+  VNPFGEA+PRE +LAE+G DW+KID +LE
Sbjct: 265 DNVGKPK-GVNPFGEARPREQVLAEKGQDWKKIDEQLE 301



 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%)

Query: 47  LVLDPRKGDGSVNETPPAMTNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKK 100
           LVL PR    S            +PFG ARPRE+VLA+KG DWKK+D ++E+ K
Sbjct: 251 LVLQPRTLSVSNEGDNVGKPKGVNPFGEARPREQVLAEKGQDWKKIDEQLESVK 304