Miyakogusa Predicted Gene

Lj0g3v0242609.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242609.1 tr|A9SI01|A9SI01_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_185181,46.05,0.0000000000003,SUBFAMILY NOT NAMED,NULL;
SEC3/SYNTAXIN-RELATED,NULL,CUFF.15848.1
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g36540.1                                                       280   4e-76
Glyma09g18840.1                                                       273   5e-74
Glyma04g03710.1                                                       262   8e-71
Glyma09g18820.1                                                       113   1e-25

>Glyma17g36540.1 
          Length = 896

 Score =  280 bits (716), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 142/167 (85%), Positives = 148/167 (88%), Gaps = 12/167 (7%)

Query: 1   MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGK-SSKLGRQMAKPRVLALST 59
           MAKSSADD ELRRAC+AAIEDPKQKIV++LRVAKS+GILGK SSKLGR MAKPRVLALS 
Sbjct: 1   MAKSSADDGELRRACDAAIEDPKQKIVMALRVAKSHGILGKPSSKLGR-MAKPRVLALSV 59

Query: 60  ----------NSKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTL 109
                      SKGQR TAFLRV KYSTGGVLEPAKLYKLKHLSKVEV+ANDPSGCTFTL
Sbjct: 60  VGDDVVFPAAKSKGQRTTAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVVANDPSGCTFTL 119

Query: 110 GFDNLRSQSVAPPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
           GFDNLRSQSVAPPQWTMRN DDRNRLLLCIL ICKDVLGRLPKVVG+
Sbjct: 120 GFDNLRSQSVAPPQWTMRNIDDRNRLLLCILNICKDVLGRLPKVVGI 166


>Glyma09g18840.1 
          Length = 896

 Score =  273 bits (698), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 146/167 (87%), Gaps = 12/167 (7%)

Query: 1   MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGKSS-KLGRQMAKPRVLALS- 58
           MAKSSADD ELRRAC+AAIEDP+QKIV++LRVAKS+GI GKSS KLGR MAKPRVLALS 
Sbjct: 1   MAKSSADDGELRRACDAAIEDPRQKIVMALRVAKSHGIFGKSSSKLGR-MAKPRVLALSI 59

Query: 59  ---------TNSKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTL 109
                      SKG R +AFLRV KYSTGGVLEPAKLYKLKHLSKVEV+ANDPSGCTFTL
Sbjct: 60  VGDDVVFPAAKSKGLRTSAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVVANDPSGCTFTL 119

Query: 110 GFDNLRSQSVAPPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
           GFDNLRSQSVAPPQWTMRN DDRNRLLLCIL ICKDVLGRLPKVVG+
Sbjct: 120 GFDNLRSQSVAPPQWTMRNIDDRNRLLLCILNICKDVLGRLPKVVGI 166


>Glyma04g03710.1 
          Length = 880

 Score =  262 bits (670), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 134/156 (85%)

Query: 1   MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGKSSKLGRQMAKPRVLALSTN 60
           MAKSSADD ELRRACE AIE  K K+VLS+R  K++G  GK++KLGRQMAKPRVLAL T 
Sbjct: 1   MAKSSADDAELRRACEHAIEGTKHKVVLSIRTVKTHGTWGKTAKLGRQMAKPRVLALCTK 60

Query: 61  SKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTLGFDNLRSQSVA 120
           +K QR  AFLRV KYS GGVLEPAKLYKLKHLSK+EV  NDPSGCTFTLGFDNLRSQSVA
Sbjct: 61  AKVQRTKAFLRVLKYSNGGVLEPAKLYKLKHLSKMEVATNDPSGCTFTLGFDNLRSQSVA 120

Query: 121 PPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
           PPQWTMRN DDRNRLL  IL ICKD+LGRLPKVVG+
Sbjct: 121 PPQWTMRNVDDRNRLLFGILNICKDILGRLPKVVGI 156


>Glyma09g18820.1 
          Length = 455

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 64/98 (65%), Gaps = 22/98 (22%)

Query: 81  LEPAKLYKLKHLSKVEVIANDPSGCTFTL-----GFDNLRSQSVAP-------------- 121
           L+PAKLYKLKHLSKVEV+ANDP GCTFTL      F  L+  +  P              
Sbjct: 1   LQPAKLYKLKHLSKVEVVANDPCGCTFTLFQTCTQFLALKQYAKHPTVPVLEDLITLEAR 60

Query: 122 ---PQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
              PQWTMRN DDRNRLLLC L ICKDVLG LPKVVG+
Sbjct: 61  VWLPQWTMRNIDDRNRLLLCFLNICKDVLGCLPKVVGI 98