Miyakogusa Predicted Gene

Lj0g3v0241429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0241429.1 Non Chatacterized Hit- tr|K4DB85|K4DB85_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,54.67,4e-16,seg,NULL,CUFF.15774.1
         (87 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g44530.1                                                       106   5e-24
Glyma12g13220.1                                                       100   2e-22

>Glyma06g44530.1 
          Length = 575

 Score =  106 bits (265), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 60/87 (68%), Gaps = 3/87 (3%)

Query: 1  MVCLGFDMVEVEAQRLELLLVKRWELRIXXXXXXXXXXXXXXXXXXXGLRPLRDRTNSWG 60
          MVCLGFDMVEV++QRL+L   +R  + I                   GLRPLRDRTNSWG
Sbjct: 1  MVCLGFDMVEVDSQRLKL---ERRGVGILLRISCGWLVFMLFFSPVAGLRPLRDRTNSWG 57

Query: 61 DEWIFAGKDESDVGPFSQWNITGTYRG 87
          DEW+F  KDESD+GPFSQWNI+GTYRG
Sbjct: 58 DEWVFTRKDESDLGPFSQWNISGTYRG 84


>Glyma12g13220.1 
          Length = 572

 Score =  100 bits (250), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 61/89 (68%), Gaps = 7/89 (7%)

Query: 1  MVCLGFDMVEVEAQRLELLL--VKRWELRIXXXXXXXXXXXXXXXXXXXGLRPLRDRTNS 58
          M+CLGFDMVEV+++RL+L    V  W LRI                   GLRPLRDRTNS
Sbjct: 1  MLCLGFDMVEVDSERLKLESRGVGIW-LRIACGWLVFMLFFSPVA----GLRPLRDRTNS 55

Query: 59 WGDEWIFAGKDESDVGPFSQWNITGTYRG 87
          WGDEW+F  KDESD+GPFSQWNI+GTYRG
Sbjct: 56 WGDEWVFTRKDESDLGPFSQWNISGTYRG 84