Miyakogusa Predicted Gene

Lj0g3v0238439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238439.1 Non Chatacterized Hit- tr|B5U9W4|B5U9W4_LOTJA
Putative uncharacterized protein OS=Lotus japonicus
PE,50.77,0.000000001,Chromo domain-like,Chromo domain-like;
Chromo,Chromo domain; CHROMO_2,Chromo domain/shadow; no
descr,CUFF.15632.1
         (69 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g13310.1                                                        66   7e-12
Glyma09g15870.1                                                        55   2e-08
Glyma19g28130.1                                                        55   2e-08

>Glyma03g13310.1 
          Length = 1279

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 46/63 (73%)

Query: 3    NEELELEVAPEDVIDQREDSQGNLEVLIKWENLATHDNSWESAALIQDRFPLFPLEDKVK 62
            +EE+EL+V   +++  RED+ GNL+VL++W+ L   +NSWESA  I + FP F LEDKV 
Sbjct: 1082 SEEMELQVQSAEILQWREDALGNLKVLVQWDQLPACENSWESAIQILEVFPQFFLEDKVV 1141

Query: 63   LLG 65
            LLG
Sbjct: 1142 LLG 1144


>Glyma09g15870.1 
          Length = 324

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 33/53 (62%)

Query: 9  EVAPEDVIDQREDSQGNLEVLIKWENLATHDNSWESAALIQDRFPLFPLEDKV 61
          +V PE V+  R    G  +VLIKWE+L  H++SWE A  +Q  FP   LEDKV
Sbjct: 21 KVQPEKVMQSRISEDGRKKVLIKWEDLPQHEDSWEHADEMQTVFPQLDLEDKV 73


>Glyma19g28130.1 
          Length = 1936

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 2    LNEELELEVAPEDVIDQREDSQGNLEVLIKWENLATHDNSWESAALIQDRFPLFPLEDKV 61
            LNE  EL+V PE V+  +    G  E+LIKW++L  H++SWE A  IQ  F  F L DKV
Sbjct: 1871 LNENWELQVQPEKVMQSKISEDGRKEILIKWQDLPHHEDSWELAEEIQTVFSQFDL-DKV 1929

Query: 62   KLLGGG 67
             L  GG
Sbjct: 1930 DLERGG 1935