Miyakogusa Predicted Gene

Lj0g3v0238359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238359.1 Non Chatacterized Hit- tr|J3LVQ7|J3LVQ7_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB04G1,41.51,1e-18,no
description,HIP116, Rad5p N-terminal; HIRAN,HIP116, Rad5p
N-terminal,CUFF.15629.1
         (260 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g05390.1                                                       351   5e-97
Glyma12g30540.1                                                       350   1e-96
Glyma20g21940.1                                                        82   7e-16

>Glyma17g05390.1 
          Length = 1009

 Score =  351 bits (900), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 180/255 (70%), Positives = 198/255 (77%), Gaps = 3/255 (1%)

Query: 1   MGSKVSDHHLSTVRSIVGPEFTDMEIIRALHMAKNDVTAAINIIFDTQTHTPKSKPTRST 60
           MGSKVSDHHLSTVRSIVG EFTDM+IIRALHMAKNDVTAAINIIFDT T  PK KPTR T
Sbjct: 1   MGSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHT-APKFKPTRPT 59

Query: 61  ATKPRRVSPPKSTPNAVAAITDIDGGASSSCPVGPDDWWFVGCGEVAGVATCKGRTVKSG 120
             +P            V A ++   G   S     DDWW V C E+  ++TCKGRT+ SG
Sbjct: 60  NPRPVSPPKSTPPTPTVNANSNYSVGERHS-DDNRDDWWLVCCSEMTCLSTCKGRTISSG 118

Query: 121 DAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFSTEPAGEIGRIPNEWARCLLPLVRD 180
           + VVF+FP KK SASPS  KGFGRAA TC+EIVRFSTE AGEIGRIPNEWARCLLPLVRD
Sbjct: 119 ETVVFKFPAKKLSASPSPGKGFGRAA-TCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRD 177

Query: 181 NKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFVKRHQVSLKDATSSTDESVFHPLPT 240
           +KV++EG CK+AP VLGIMD+I LSVSVFIN SMF K HQVSLKDA +STDESVFHPL  
Sbjct: 178 HKVRIEGQCKYAPKVLGIMDSIVLSVSVFINSSMFGKHHQVSLKDAANSTDESVFHPLTN 237

Query: 241 LFRLLGLSPFKKHHL 255
           LFRLLGL+PFKK  L
Sbjct: 238 LFRLLGLNPFKKAEL 252


>Glyma12g30540.1 
          Length = 1001

 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/255 (71%), Positives = 201/255 (78%), Gaps = 3/255 (1%)

Query: 1   MGSKVSDHHLSTVRSIVGPEFTDMEIIRALHMAKNDVTAAINIIFDTQTHTPKSKPTRST 60
           MGSKVSDHHLSTVRSIVG EF+DM+IIRALHMAKNDVTAAINIIFDT T  PK K TR T
Sbjct: 1   MGSKVSDHHLSTVRSIVGSEFSDMDIIRALHMAKNDVTAAINIIFDTHT-APKFKATRPT 59

Query: 61  ATKPRRVSPPKSTPNAVAAITDIDGGASSSCPVGPDDWWFVGCGEVAGVATCKGRTVKSG 120
              P     P      V A ++   G   S     DDWWFV CGE+ G++TCKGRT+ SG
Sbjct: 60  NPPPVSPPEPTPPAPTVTANSNHRVGERHS-DSNRDDWWFVSCGEMTGLSTCKGRTISSG 118

Query: 121 DAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFSTEPAGEIGRIPNEWARCLLPLVRD 180
           + VVF+FP KK SASPS  KGFGRA A C+EIVRFSTE AGEIGRIPNEW RCLLPLVRD
Sbjct: 119 ETVVFKFPAKKLSASPSPGKGFGRAVA-CSEIVRFSTEQAGEIGRIPNEWGRCLLPLVRD 177

Query: 181 NKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFVKRHQVSLKDATSSTDESVFHPLPT 240
           +KV++EG CK+AP+VLGIMD+I LSVSVFIN SMF K HQVSLKDA +STDESVFHPLPT
Sbjct: 178 HKVRIEGQCKYAPNVLGIMDSIVLSVSVFINSSMFDKHHQVSLKDAANSTDESVFHPLPT 237

Query: 241 LFRLLGLSPFKKHHL 255
           LFRLLGL+PFKK  L
Sbjct: 238 LFRLLGLNPFKKAEL 252


>Glyma20g21940.1 
          Length = 1075

 Score = 81.6 bits (200), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 21/207 (10%)

Query: 48  QTHTPKSKPTRSTATKPRRVSPPKSTPNAVAAITDIDGGASSSCPVGPDDWWFVGCGEVA 107
           Q+  PK K       +   V  P    N +  I++++ G           W+ +G     
Sbjct: 136 QSAQPKKKAVTGDDVEVVEVRKPVEKKN-IPNISNLEDGEFPE----ESGWFLLGRKVEV 190

Query: 108 GVATCKG-RTVKSGDAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFSTEPAGEIGRI 166
            V+T +G   +   + V F FP   PS S  +             IVR ST+ +GE+GR+
Sbjct: 191 AVSTARGVNRLVDNEIVHFNFP--IPSYSSKS-----------QWIVRASTKRSGEVGRM 237

Query: 167 PNEWARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFVKRHQVSLK-D 225
           P EWA+ ++P+++  +VKV G C   PD L +M  I   VS +++ S+F +R   S + +
Sbjct: 238 PMEWAKAVIPVMQSGRVKVRGRCIAVPDKLQMMQEIMFLVSFYVHHSVFAERVDTSWRLE 297

Query: 226 ATSSTDESVFHPLPTLFRLLGLSPFKK 252
           A    D++V+ PL  L ++L + P +K
Sbjct: 298 ACGKIDDTVY-PLLALLKMLEIKPSQK 323