Miyakogusa Predicted Gene

Lj0g3v0237789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0237789.1 Non Chatacterized Hit- tr|I1J9Q6|I1J9Q6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,73.17,0.0000004,
,CUFF.15581.1
         (65 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g41300.1                                                        59   1e-09
Glyma01g24600.1                                                        58   2e-09

>Glyma01g41300.1 
          Length = 581

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 33/41 (80%)

Query: 25  VIQICPLSIFSLMKCLSTSTCLVLSCRTGLCAIDIADLLSQ 65
           ++QI PLS FSL+KCLSTS CLVLSC T L  I IADLLSQ
Sbjct: 350 LVQIKPLSSFSLIKCLSTSICLVLSCCTRLWVILIADLLSQ 390


>Glyma01g24600.1 
          Length = 170

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 36/65 (55%), Gaps = 27/65 (41%)

Query: 1   MLSKDFLGNPLVRMSADCSAVGTYVIQICPLSIFSLMKCLSTSTCLVLSCRTGLCAIDIA 60
           MLS DFLGNPL                           CLSTSTCLVLSCRTGLCAI IA
Sbjct: 120 MLSNDFLGNPL---------------------------CLSTSTCLVLSCRTGLCAIYIA 152

Query: 61  DLLSQ 65
           DLLSQ
Sbjct: 153 DLLSQ 157