Miyakogusa Predicted Gene

Lj0g3v0237119.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0237119.1 tr|E1Z533|E1Z533_CHLVA Expressed protein
OS=Chlorella variabilis GN=CHLNCDRAFT_138026 PE=4
SV=1,40,0.00000000006,MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28,NULL; no
description,NULL; MRP-S28,Ribosomal protein S24/S35,CUFF.15634.1
         (321 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g27040.1                                                       560   e-160
Glyma08g10020.3                                                       554   e-158
Glyma08g10020.1                                                       554   e-158
Glyma08g10020.2                                                       533   e-151
Glyma11g12010.1                                                        77   2e-14
Glyma20g31240.1                                                        65   1e-10
Glyma17g21580.1                                                        52   1e-06

>Glyma05g27040.1 
          Length = 390

 Score =  560 bits (1443), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/319 (84%), Positives = 290/319 (90%)

Query: 2   IDQYLKGDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDVSDREFEEDFEEAH 61
           I+ Y KGDE+VLP I E IL R+LSGKH+DTDDE+M+ELRM PLDDV DR+FE DFE  H
Sbjct: 59  IESYFKGDEQVLPSIMETILKRKLSGKHEDTDDELMEELRMRPLDDVDDRDFESDFENIH 118

Query: 62  QTDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILEDML 121
            TDEEIDDLYNARDVV KRMV DEYFNMD KKWD+IV+DG+ HG L+DTKECEEILEDML
Sbjct: 119 DTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDML 178

Query: 122 SWDKLLPDEIKQKVEIKFNELGDMCERGELEPEAAYEQFKKFEDEMVMEYMKIMEKEEAP 181
           SWDKLLPDEIKQKVE+KFNELGDMCE+GELEPE AYEQFKKFEDE+V EY+  MEKEEAP
Sbjct: 179 SWDKLLPDEIKQKVEVKFNELGDMCEKGELEPEEAYEQFKKFEDEIVAEYLDKMEKEEAP 238

Query: 182 QSDDTAVPDKKKESDDPPGEGPILRWVTRAVFAPGGDAWHPKNRKVKLSVTVKELGLSKY 241
           Q DDT VPDKKK+ DDPPGEGPILRW TR VFAPGGDAWHPKNRKVKLSVTVKELGLSKY
Sbjct: 239 QFDDTTVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKY 298

Query: 242 QFRRLRELVGKRYHPGRDELTITSERYEHREENRKDCLRTLLSLIEEAGKANKLVDNART 301
           QFRRLRELVGKRYHPGRDELTITSER+EHREENRKDCLRTLL LIEEAGKANKLVD+AR+
Sbjct: 299 QFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLHLIEEAGKANKLVDDARS 358

Query: 302 SYAKERLRANPAFMARLHA 320
           SY KERLRANPAFM RLHA
Sbjct: 359 SYVKERLRANPAFMERLHA 377


>Glyma08g10020.3 
          Length = 390

 Score =  554 bits (1428), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/319 (84%), Positives = 288/319 (90%)

Query: 2   IDQYLKGDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDVSDREFEEDFEEAH 61
           I+ Y KGDE+VLP I EAIL R+LSG H+DTDDE+M+ELRM PLDDV DR+FE DFE  H
Sbjct: 59  IETYFKGDEKVLPSIMEAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIH 118

Query: 62  QTDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILEDML 121
            TDEEIDDLYNARDVV KRMV DEYFNMD KKWD+IV+DG+ HG L+DTKECEEILEDML
Sbjct: 119 DTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDML 178

Query: 122 SWDKLLPDEIKQKVEIKFNELGDMCERGELEPEAAYEQFKKFEDEMVMEYMKIMEKEEAP 181
           SWDKLLPD+IKQKVE+KFNELGDMCERGELEPE AYEQFKKFEDE+V +Y+  MEKEEA 
Sbjct: 179 SWDKLLPDDIKQKVEVKFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEAS 238

Query: 182 QSDDTAVPDKKKESDDPPGEGPILRWVTRAVFAPGGDAWHPKNRKVKLSVTVKELGLSKY 241
           Q DDT VPDKKK+ DDPPGEGPILRW TR VFAPGGDAWHPKNRKVKLSVTVKELGLSKY
Sbjct: 239 QFDDTVVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKY 298

Query: 242 QFRRLRELVGKRYHPGRDELTITSERYEHREENRKDCLRTLLSLIEEAGKANKLVDNART 301
           QFRRLRELVGKRYHPGRDELTITSER+EHREENRKDCLRTLLSLIEEAGKANKLVD+AR+
Sbjct: 299 QFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARS 358

Query: 302 SYAKERLRANPAFMARLHA 320
           SY KERL  NPAFM RLHA
Sbjct: 359 SYVKERLHTNPAFMERLHA 377


>Glyma08g10020.1 
          Length = 390

 Score =  554 bits (1428), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/319 (84%), Positives = 288/319 (90%)

Query: 2   IDQYLKGDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDVSDREFEEDFEEAH 61
           I+ Y KGDE+VLP I EAIL R+LSG H+DTDDE+M+ELRM PLDDV DR+FE DFE  H
Sbjct: 59  IETYFKGDEKVLPSIMEAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIH 118

Query: 62  QTDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILEDML 121
            TDEEIDDLYNARDVV KRMV DEYFNMD KKWD+IV+DG+ HG L+DTKECEEILEDML
Sbjct: 119 DTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDML 178

Query: 122 SWDKLLPDEIKQKVEIKFNELGDMCERGELEPEAAYEQFKKFEDEMVMEYMKIMEKEEAP 181
           SWDKLLPD+IKQKVE+KFNELGDMCERGELEPE AYEQFKKFEDE+V +Y+  MEKEEA 
Sbjct: 179 SWDKLLPDDIKQKVEVKFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEAS 238

Query: 182 QSDDTAVPDKKKESDDPPGEGPILRWVTRAVFAPGGDAWHPKNRKVKLSVTVKELGLSKY 241
           Q DDT VPDKKK+ DDPPGEGPILRW TR VFAPGGDAWHPKNRKVKLSVTVKELGLSKY
Sbjct: 239 QFDDTVVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKY 298

Query: 242 QFRRLRELVGKRYHPGRDELTITSERYEHREENRKDCLRTLLSLIEEAGKANKLVDNART 301
           QFRRLRELVGKRYHPGRDELTITSER+EHREENRKDCLRTLLSLIEEAGKANKLVD+AR+
Sbjct: 299 QFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARS 358

Query: 302 SYAKERLRANPAFMARLHA 320
           SY KERL  NPAFM RLHA
Sbjct: 359 SYVKERLHTNPAFMERLHA 377


>Glyma08g10020.2 
          Length = 317

 Score =  533 bits (1373), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/303 (85%), Positives = 276/303 (91%)

Query: 18  EAILIRRLSGKHDDTDDEMMDELRMGPLDDVSDREFEEDFEEAHQTDEEIDDLYNARDVV 77
           EAIL R+LSG H+DTDDE+M+ELRM PLDDV DR+FE DFE  H TDEEIDDLYNARDVV
Sbjct: 2   EAILKRKLSGNHEDTDDELMEELRMRPLDDVDDRDFESDFESIHDTDEEIDDLYNARDVV 61

Query: 78  QKRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILEDMLSWDKLLPDEIKQKVEI 137
            KRMV DEYFNMD KKWD+IV+DG+ HG L+DTKECEEILEDMLSWDKLLPD+IKQKVE+
Sbjct: 62  MKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDMLSWDKLLPDDIKQKVEV 121

Query: 138 KFNELGDMCERGELEPEAAYEQFKKFEDEMVMEYMKIMEKEEAPQSDDTAVPDKKKESDD 197
           KFNELGDMCERGELEPE AYEQFKKFEDE+V +Y+  MEKEEA Q DDT VPDKKK+ DD
Sbjct: 122 KFNELGDMCERGELEPEEAYEQFKKFEDEIVAKYLDKMEKEEASQFDDTVVPDKKKDLDD 181

Query: 198 PPGEGPILRWVTRAVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPG 257
           PPGEGPILRW TR VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPG
Sbjct: 182 PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPG 241

Query: 258 RDELTITSERYEHREENRKDCLRTLLSLIEEAGKANKLVDNARTSYAKERLRANPAFMAR 317
           RDELTITSER+EHREENRKDCLRTLLSLIEEAGKANKLVD+AR+SY KERL  NPAFM R
Sbjct: 242 RDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARSSYVKERLHTNPAFMER 301

Query: 318 LHA 320
           LHA
Sbjct: 302 LHA 304


>Glyma11g12010.1 
          Length = 130

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 48/81 (59%), Gaps = 14/81 (17%)

Query: 63  TDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEIVQDGVNHGFLKDTKECEEILEDMLS 122
           T+EEIDDLYNARDVV KRMV DEYFNMD KKWD+IV+DG+ H                  
Sbjct: 35  TNEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHS--------------RWM 80

Query: 123 WDKLLPDEIKQKVEIKFNELG 143
           W K+ P  +  +V  KF E  
Sbjct: 81  WLKMAPRTMYNRVNKKFMECS 101


>Glyma20g31240.1 
          Length = 136

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 13/69 (18%)

Query: 25 LSGKHDDTDDEMMDELRMGPLDDVSDREFEEDFEEAHQTDEEIDDLYNARDVVQKRMVHD 84
          L  KH+DTDD           +D+  R+FE DFE+ H T+EEIDDLYN R+V  KRMV  
Sbjct: 16 LPRKHEDTDD-----------NDI--RDFESDFEDTHDTNEEIDDLYNGRNVEMKRMVKA 62

Query: 85 EYFNMDPKK 93
           YFNMD KK
Sbjct: 63 GYFNMDDKK 71


>Glyma17g21580.1 
          Length = 69

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 2  IDQYLKGDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDVSDREFEEDFEEAH 61
          I+ Y KGD  VLP I EA L  +LSGK + T+D++M+ELRM PLDDV D +    FE+ +
Sbjct: 5  IESYFKGDGHVLPSIMEATLKWKLSGKLEGTNDKLMEELRMCPLDDVDDWD----FEDIN 60

Query: 62 QTDEEIDD 69
            DEEI+D
Sbjct: 61 YNDEEIND 68