Miyakogusa Predicted Gene

Lj0g3v0233579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233579.1 tr|G4HLS2|G4HLS2_9BACL Ribosome biogenesis GTPase
A OS=Paenibacillus lactis 154 GN=PaelaDRAFT_4933
P,42.2,6e-18,GTP-BINDING PROTEIN-RELATED,NULL; P-loop containing
nucleoside triphosphate hydrolases,NULL; no desc,CUFF.15273.1
         (134 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g29110.1                                                       180   4e-46
Glyma19g31920.1                                                       177   2e-45
Glyma19g33870.2                                                        67   4e-12
Glyma19g33870.1                                                        67   4e-12
Glyma08g16740.1                                                        56   1e-08

>Glyma03g29110.1 
          Length = 377

 Score =  180 bits (456), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 93/119 (78%)

Query: 16  DMAFNTGGGAITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKR 75
           DMAFN GGGAITW PGHM AATRAI  RLKL+DLVIEVRDARIPLSSANA+LQPHLS+KR
Sbjct: 16  DMAFNAGGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPLSSANADLQPHLSAKR 75

Query: 76  RVIALNKKDLANPNIMHKWTSYFDSCKQVCFPINAHSRSSXXXXXXXXXXXXXXXISKE 134
           RV+ALNKKDLANPNIMHKWT YF++C Q C  INAHS+SS               I KE
Sbjct: 76  RVVALNKKDLANPNIMHKWTHYFETCNQNCVAINAHSKSSVKKLLEVVEFKLKEVICKE 134


>Glyma19g31920.1 
          Length = 377

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/100 (83%), Positives = 88/100 (88%)

Query: 16  DMAFNTGGGAITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKR 75
           DMAFN GGGAITW PGHM AATRAI  RLKL+DLVIEVRDARIP SSANA+LQPHLS+KR
Sbjct: 16  DMAFNAGGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPFSSANADLQPHLSAKR 75

Query: 76  RVIALNKKDLANPNIMHKWTSYFDSCKQVCFPINAHSRSS 115
           RV+ALNKKDLANPNIMHKWT YF+SC Q C  INAHS SS
Sbjct: 76  RVVALNKKDLANPNIMHKWTHYFESCNQNCVAINAHSMSS 115


>Glyma19g33870.2 
          Length = 358

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 48/73 (65%)

Query: 26  ITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRRVIALNKKDL 85
           + W PGH+  A + +  +LKL D+VIEVRD RIP+S+++  +   L +++R++ LN++D+
Sbjct: 90  VQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDM 149

Query: 86  ANPNIMHKWTSYF 98
            +    + W  YF
Sbjct: 150 ISTADRNAWADYF 162


>Glyma19g33870.1 
          Length = 366

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 48/73 (65%)

Query: 26  ITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRRVIALNKKDL 85
           + W PGH+  A + +  +LKL D+VIEVRD RIP+S+++  +   L +++R++ LN++D+
Sbjct: 90  VQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDM 149

Query: 86  ANPNIMHKWTSYF 98
            +    + W  YF
Sbjct: 150 ISTADRNAWADYF 162


>Glyma08g16740.1 
          Length = 197

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 35 AATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRRVIALNKKDLANPNIMHKW 94
          AA+RAI  R+ L+DLV++VRDARIPLSS    L+ +  S ++++ALNK DL   + +  W
Sbjct: 33 AASRAIAERIPLADLVVQVRDARIPLSSECEILRNYPPSLKQIVALNKMDLVGTSNVKVW 92