Miyakogusa Predicted Gene

Lj0g3v0231399.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0231399.1 tr|B6SUJ7|B6SUJ7_MAIZE Photosystem II core
complex proteins psbY OS=Zea mays PE=2
SV=1,56.03,1e-18,PsbY,Photosystem II PsbY; seg,NULL;
PSII_PsbY,Photosystem II PsbY,CUFF.15158.1
         (204 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g37580.1                                                       202   2e-52
Glyma18g01530.1                                                       158   3e-39
Glyma05g30600.1                                                       145   4e-35
Glyma08g13790.1                                                       141   6e-34

>Glyma11g37580.1 
          Length = 197

 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 129/199 (64%), Gaps = 20/199 (10%)

Query: 12  NSKCFTT-----KMINPTNTKLTASKPT-TLFSFQNLPKGLSSAENTSVSTTSMAGTAIA 65
           NSKC  T     K+ NP   KL  SKPT +LFS QNLPKGL     TS  +TS AGTAIA
Sbjct: 13  NSKCINTTGSSHKLHNP---KLPPSKPTLSLFSLQNLPKGL-----TSHVSTSTAGTAIA 64

Query: 66  GAIFSSLVSCDXXXXXXXXXXXXXGDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRN 125
           GAIFSSL +CD             GDNRG            WVLFNILQPALNQ+NRMRN
Sbjct: 65  GAIFSSLANCDAALAASQIAELAEGDNRGLALLLPLIPAIAWVLFNILQPALNQLNRMRN 124

Query: 126 SNGVIVXXXXXXXXXXXXSGMLWAPEASAGELGMIADAAAGGSDNRGQLLLFVVAPAIGW 185
           S GVIV            SGM+  PEASA E+ MIADAAA  SDNRGQLLLFVV PAI W
Sbjct: 125 SKGVIV----GLGLGLCASGMMSGPEASASEIAMIADAAA--SDNRGQLLLFVVTPAIVW 178

Query: 186 VLFNILQPALNQINRMRSE 204
           VL+NILQPALNQ+NRMRSE
Sbjct: 179 VLYNILQPALNQLNRMRSE 197


>Glyma18g01530.1 
          Length = 187

 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 111/197 (56%), Gaps = 26/197 (13%)

Query: 12  NSKCF---TTKMINPTNTKLTASKPT-TLFSFQNLPKGLSSAENTSVSTTSMAGTAIAGA 67
           NSKC    T       N KL  SKPT +LFS QN PKG++S    S              
Sbjct: 13  NSKCLNPITGSSPKSNNPKLPPSKPTLSLFSIQNFPKGITSNAQYS-------------- 58

Query: 68  IFSSLVSCDXXXXXXXXXXXXXGDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRNSN 127
              SL +CD             GDNRG            WVLFNILQPALNQ+NRMR+S 
Sbjct: 59  --PSLANCDAALAASQIAEIAEGDNRGLALLLPLIPAIVWVLFNILQPALNQLNRMRSSK 116

Query: 128 GVIVXXXXXXXXXXXXSGMLWAPEASAGELGMIADAAAGGSDNRGQLLLFVVAPAIGWVL 187
           GVI+            SGML+  +ASA E+ +IADAAA  SDNRGQLLL VV PAI WV+
Sbjct: 117 GVIIGLGLGLGA----SGMLFGSDASASEIAVIADAAA--SDNRGQLLLIVVTPAIVWVM 170

Query: 188 FNILQPALNQINRMRSE 204
           +NILQPALNQ+NRMRSE
Sbjct: 171 YNILQPALNQLNRMRSE 187


>Glyma05g30600.1 
          Length = 187

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 112/194 (57%), Gaps = 19/194 (9%)

Query: 12  NSKCFTTKMINPTNTKLTASKPTTLFSFQNLPKGL-SSAENTSVSTTSMAGTAIAGAIFS 70
           N+KC   K  NPT  KL  SKP+      NLPKGL +S E+T +S      TAIAGAIF+
Sbjct: 12  NAKCVNPKFPNPT--KLAPSKPSLQI---NLPKGLIASPESTKLSP----ATAIAGAIFT 62

Query: 71  SLVSCDXXXXXXXXXXXXXGDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRNSNGVI 130
           +L +CD             GDNRG            WVLFNILQPALNQ+NRMR++ GVI
Sbjct: 63  TLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVI 122

Query: 131 VXXXXXXXXXXXXSGMLWAPEASAGELGMIADAAAGGSDNRGQLLLFVVAPAIGWVLFNI 190
           +                    A+       ++AAA  SDNRGQLLLFVV PAI WVL+NI
Sbjct: 123 IGLGLGGLAGL---------AAAPHAWAAASEAAAAASDNRGQLLLFVVTPAIAWVLYNI 173

Query: 191 LQPALNQINRMRSE 204
           LQPALNQ+NRMRS+
Sbjct: 174 LQPALNQLNRMRSQ 187


>Glyma08g13790.1 
          Length = 192

 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/195 (49%), Positives = 115/195 (58%), Gaps = 16/195 (8%)

Query: 12  NSKCFTTKMINPTNTKLTASKPTTLFSFQ-NLPKGL-SSAENTSVSTTSMAGTAIAGAIF 69
           N+KC   K  NPT  KL  SKP    S Q NLPKGL +S ENT +ST     TAIAGAIF
Sbjct: 12  NAKCVNPKFPNPT--KLVPSKP----SLQVNLPKGLIASPENTKLST----ATAIAGAIF 61

Query: 70  SSLVSCDXXXXXXXXXXXXXGDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRNSNGV 129
           ++L +CD             GDNRG            WVLFNILQPALNQ+NRMR++ GV
Sbjct: 62  TTLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGV 121

Query: 130 IVXXXXXXXXXXXXSGMLWAPEASAGELGMIADAAAGGSDNRGQLLLFVVAPAIGWVLFN 189
           I+            +       ++A    + A A A  +DNRGQLLLFVV PAI WVL+N
Sbjct: 122 IIGLGLGGLAGLVAAPH----ASAAAASEVAAMAEAASNDNRGQLLLFVVTPAIAWVLYN 177

Query: 190 ILQPALNQINRMRSE 204
           ILQPALNQ+NRMRS+
Sbjct: 178 ILQPALNQLNRMRSQ 192