Miyakogusa Predicted Gene

Lj0g3v0230509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230509.1 tr|A9SKT2|A9SKT2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233549,40.49,1e-17,Putative DNA-binding (bihelical)
motif predi,DNA-binding SAP; SAP,DNA-binding SAP; no
description,DN,CUFF.15082.1
         (594 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g02310.1                                                       670   0.0  
Glyma11g36120.1                                                       628   e-180

>Glyma18g02310.1 
          Length = 677

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/589 (62%), Positives = 413/589 (70%), Gaps = 70/589 (11%)

Query: 5   RVLDNRPIHQWXXXXXXXXXXXXXXXXXGLKDDLIRRLXXXXXXXXXXXXXXXXXXXXXX 64
           ++LDNRPI+QW                 GLKDDL++RL                      
Sbjct: 6   QILDNRPINQWKVTELKDELKRRKLSIKGLKDDLVKRLDEVLR----------------- 48

Query: 65  XXXXXXXXXXXXGADPPDAEREGAVASEKDEANGVDGDVAGVKDSQTVTVDAEAADVNEK 124
                              ERE   ASEKDEANG DG V G KDS+ VTVDAE  D  ++
Sbjct: 49  ------------------LEREADEASEKDEANGFDGHVDGEKDSEAVTVDAEMVDSTDR 90

Query: 125 ERAQXXXXXXXXXXXXXXXXXXXNAEKIPPEVVDYDSNKNDKQDGVTIPIDINNSVSTMD 184
           + A+                   N EKI PEVVD+DSNKNDKQDGVT  +DINNSVS +D
Sbjct: 91  DNAKTFETAEKGKSGVVDPVEIENVEKI-PEVVDHDSNKNDKQDGVTNQVDINNSVSAID 149

Query: 185 QEIEYSRLPAGADSANAGEDVIVHSSXXXXXXXXXXXXXXXXXXSGQDSDRVYKNNEDSG 244
           QE+E   LPA         +V+                      S +DS R  KNNEDS 
Sbjct: 150 QEVEPKGLPA---------EVVA---------------------SAEDSYRAEKNNEDSA 179

Query: 245 IKLDNEQSKVQLDSEDSKPQLQCDTKALCEDLMPDSSIPENQVSEVNPSLGSQVKSDSIS 304
            KL+NE+SK QLD EDSKPQL CD K L ED +PDSS+PENQVSEVNPSLGSQVKSDSIS
Sbjct: 180 AKLENEESKAQLDGEDSKPQLDCDIKPLHEDPVPDSSVPENQVSEVNPSLGSQVKSDSIS 239

Query: 305 TDSVSINQKNELKDTIIADNVKLEQDFVRPEMVQEPSSRNDEPV-YDESNSMDVGGLHEK 363
           TDS+SINQKNELKDTII DNVKLEQD V+PEMV+EPSSRND PV YDES+SMDVGGLHEK
Sbjct: 240 TDSLSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHSMDVGGLHEK 299

Query: 364 KASVEENTNNITSPDFNKTINSDDAGYPEKLNLDRSSGDDSMEEDVPETKQFDSKFNVDE 423
           KASVEEN NN+ SPD NKT +SDD GYPE+LNLDRSSGDDSMEED+PETKQ DSKFNVDE
Sbjct: 300 KASVEENFNNVLSPDMNKTNSSDDVGYPEELNLDRSSGDDSMEEDLPETKQIDSKFNVDE 359

Query: 424 LSLRDKGENIEVSIVKEENNTVVVGDGLSAGKSDTNLDIDMSPVALADKRKYAEQASVGN 483
             L+DK E IE  IVKEE++T+ VGDGLSAG+SD + DID+SPVA  +KRK+ EQASVGN
Sbjct: 360 --LKDKIE-IEEPIVKEESSTIAVGDGLSAGESDIHQDIDISPVAPTEKRKFNEQASVGN 416

Query: 484 NEPAKRQRRWSTETRKGADLQSTTPRPPTTPKDEPVAPKRNFPRSDSFAAADAPKERIVP 543
           NEPAKRQRRW+TET KG D QSTTPRP TTP+DEP+A KRNF RSDS A  D PKERIVP
Sbjct: 417 NEPAKRQRRWNTETVKGPDAQSTTPRPATTPRDEPIALKRNFSRSDSSATDDTPKERIVP 476

Query: 544 PSQRTPTNSLRIDRFLRPFTLKAVQELLGKTGKVSSFWMDQIKTHCYVT 592
           P QR+PTNSLRIDRFLRPFTLKAVQELLGKTG VSSFWMDQIKTHCYVT
Sbjct: 477 PPQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVT 525


>Glyma11g36120.1 
          Length = 682

 Score =  628 bits (1620), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 351/589 (59%), Positives = 396/589 (67%), Gaps = 66/589 (11%)

Query: 5   RVLDNRPIHQWXXXXXXXXXXXXXXXXXGLKDDLIRRLXXXXXXXXXXXXXXXXXXXXXX 64
           ++L NRPI+QW                 GLKDDL++RL                      
Sbjct: 6   QILHNRPINQWKVTELKDELKRRKISTKGLKDDLVKRLDEVLR----------------- 48

Query: 65  XXXXXXXXXXXXGADPPDAEREGAVASEKDEANGVDGDVAGVKDSQTVTVDAEAADVNEK 124
                              ERE   ASEKDEANG DG   G K  + VTVDAE  D  ++
Sbjct: 49  ------------------LEREVDEASEKDEANGFDGHADGKKVPEAVTVDAEMVDSTDR 90

Query: 125 ERAQXXXXXXXXXXXXXXXXXXXNAEKIPPEVVDYDSNKNDKQDGVTIPIDINNSVSTMD 184
             A+                   N EKI  E+VD+DS+KNDKQD V+  ++INNSVS MD
Sbjct: 91  ASAKTFDTAEKGKGGFVDPIETGNVEKIQ-EIVDHDSDKNDKQDSVSNQVNINNSVSAMD 149

Query: 185 QEIEYSRLPAGADSANAGEDVIVHSSXXXXXXXXXXXXXXXXXXSGQDSDRVYKNNEDSG 244
           QE+E   LPAG D AN G + I H+S                                  
Sbjct: 150 QEVEPKGLPAGGDYANVGHEAIAHASTVETIITVTETA---------------------- 187

Query: 245 IKLDNEQSKVQLDSEDSKPQLQCDTKALCEDLMPDSSIPENQVSEVNPSLGSQVKSDSIS 304
            +L+NE SK QLD EDSKPQL  DTK L ED +PDS++PENQVSEVNPSLGSQVKSDSIS
Sbjct: 188 -QLENEVSKAQLDGEDSKPQLDYDTKPLHEDPVPDSAVPENQVSEVNPSLGSQVKSDSIS 246

Query: 305 TDSVSINQKNELKDTIIADNVKLEQDFVRPEMVQEPSSRNDEPV-YDESNSMDVGGLHEK 363
           TDS+SINQKNELKDTII DNVKLEQD V+PEMV+EPSSRND PV YDES+SMDVGGLHEK
Sbjct: 247 TDSLSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHSMDVGGLHEK 306

Query: 364 KASVEENTNNITSPDFNKTINSDDAGYPEKLNLDRSSGDDSMEEDVPETKQFDSKFNVDE 423
           KASVEEN NN++SPD NKT +SDD GY EKLNLDRSSGDDSMEED+PETKQ DSKFNVDE
Sbjct: 307 KASVEENINNVSSPDLNKTNSSDDVGYSEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDE 366

Query: 424 LSLRDKGENIEVSIVKEENNTVVVGDGLSAGKSDTNLDIDMSPVALADKRKYAEQASVGN 483
             L+DK E IE  IVKEE++T+ VGD LSAGK DT+ DID+SP AL +KRK+ E   VGN
Sbjct: 367 --LKDKVE-IEKPIVKEESSTIAVGDSLSAGKDDTHQDIDISPAALTEKRKFNE---VGN 420

Query: 484 NEPAKRQRRWSTETRKGADLQSTTPRPPTTPKDEPVAPKRNFPRSDSFAAADAPKERIVP 543
           +EPAKRQRRW+TET KG D QSTTPRP TTP+DEP+  KR+F RSDS A  D PKE IVP
Sbjct: 421 SEPAKRQRRWNTETVKGPDAQSTTPRPATTPRDEPITLKRSFSRSDSSATDDTPKEHIVP 480

Query: 544 PSQRTPTNSLRIDRFLRPFTLKAVQELLGKTGKVSSFWMDQIKTHCYVT 592
           PSQR+PTNSLRIDRFLRPFTLKAVQELLGKTG VSSFWMDQIKTHCYVT
Sbjct: 481 PSQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVT 529