Miyakogusa Predicted Gene

Lj0g3v0221779.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0221779.4 tr|B9HHB4|B9HHB4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_562926 PE=4 SV=1,44.76,1e-18,
,CUFF.14407.4
         (102 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g18400.1                                                       177   2e-45
Glyma10g08050.1                                                        69   9e-13

>Glyma17g18400.1 
          Length = 509

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 95/102 (93%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAA 60
           M+DKI+ ADKKVLVDIVKL+QKRG+KGNLG WKEFLNS+DKKFGA +SDP+KR+HEVLAA
Sbjct: 1   MEDKIETADKKVLVDIVKLAQKRGLKGNLGGWKEFLNSHDKKFGAGLSDPSKRSHEVLAA 60

Query: 61  FLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHDSPEQGL 102
           FLKTFS E+DLKFF NIMRHHS+QY +E+LKDKSHDSPEQ L
Sbjct: 61  FLKTFSKEEDLKFFDNIMRHHSNQYMLERLKDKSHDSPEQRL 102


>Glyma10g08050.1 
          Length = 302

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 38/40 (95%)

Query: 33 KEFLNSYDKKFGASMSDPAKRTHEVLAAFLKTFSMEDDLK 72
          KEFLN++DKKFGA +SDP+KR+HEVLAAFLKTFS E++LK
Sbjct: 1  KEFLNNHDKKFGAGLSDPSKRSHEVLAAFLKTFSKEEELK 40