Miyakogusa Predicted Gene

Lj0g3v0217619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0217619.1 tr|Q3LT95|Q3LT95_VIBHA 50S ribosomal protein L27
OS=Vibrio harveyi GN=rpmA PE=3
SV=1,73.44,2e-19,Ribosomal_L27,Ribosomal protein L27;
RIBOSOMAL_L27,Ribosomal protein L27, conserved site; RIBOSOMAL
,CUFF.14056.1
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g16890.2                                                       199   8e-52
Glyma04g16890.1                                                       199   8e-52
Glyma11g13680.1                                                       195   2e-50
Glyma04g28020.2                                                        84   6e-17
Glyma11g21150.1                                                        84   7e-17
Glyma04g28020.1                                                        78   3e-15

>Glyma04g16890.2 
          Length = 147

 Score =  199 bits (506), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 99/105 (94%)

Query: 36  MNFGASLCRRLSIKELVTNVPVYRSTGDVSGEGLSMVFSRWASKKTAGSTKNGRDSKPKN 95
           MNF ASLCRRL+IKEL TNVPVY+ST DVSGEGLS  F RWASKKTAGSTKNGRDSKPKN
Sbjct: 1   MNFAASLCRRLNIKELATNVPVYKSTSDVSGEGLSFTFRRWASKKTAGSTKNGRDSKPKN 60

Query: 96  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKQG 140
           LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVG+GKDH+LFALK+G
Sbjct: 61  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHSLFALKEG 105


>Glyma04g16890.1 
          Length = 147

 Score =  199 bits (506), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 99/105 (94%)

Query: 36  MNFGASLCRRLSIKELVTNVPVYRSTGDVSGEGLSMVFSRWASKKTAGSTKNGRDSKPKN 95
           MNF ASLCRRL+IKEL TNVPVY+ST DVSGEGLS  F RWASKKTAGSTKNGRDSKPKN
Sbjct: 1   MNFAASLCRRLNIKELATNVPVYKSTSDVSGEGLSFTFRRWASKKTAGSTKNGRDSKPKN 60

Query: 96  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKQG 140
           LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVG+GKDH+LFALK+G
Sbjct: 61  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHSLFALKEG 105


>Glyma11g13680.1 
          Length = 147

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/105 (88%), Positives = 99/105 (94%)

Query: 36  MNFGASLCRRLSIKELVTNVPVYRSTGDVSGEGLSMVFSRWASKKTAGSTKNGRDSKPKN 95
           MNF ASLCRRL+IKELVT VPVYRST  VSGEGL++ F RWASKKTAGSTKNGRDSKPKN
Sbjct: 1   MNFAASLCRRLNIKELVTYVPVYRSTSGVSGEGLNLAFRRWASKKTAGSTKNGRDSKPKN 60

Query: 96  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKQG 140
           LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVG+GKDH+LFALK+G
Sbjct: 61  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHSLFALKEG 105


>Glyma04g28020.2 
          Length = 191

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query: 77  ASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFA 136
           A KK AGSTKNGRDS+ K LGVK +G +   PG+IIVRQRGT+FH G  VG+GKD+T+F+
Sbjct: 56  AHKKGAGSTKNGRDSQGKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDYTIFS 115

Query: 137 LKQG 140
           L  G
Sbjct: 116 LIDG 119


>Glyma11g21150.1 
          Length = 194

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query: 77  ASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFA 136
           A KK AGSTKNGRDS+ K LGVK +G +   PG+IIVRQRGT+FH G  VG+GKD+T+F+
Sbjct: 59  AHKKGAGSTKNGRDSQGKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDYTIFS 118

Query: 137 LKQG 140
           L  G
Sbjct: 119 LIDG 122


>Glyma04g28020.1 
          Length = 194

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 3/67 (4%)

Query: 77  ASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRG---TRFHPGNYVGIGKDHT 133
           A KK AGSTKNGRDS+ K LGVK +G +   PG+IIVRQRG   T+FH G  VG+GKD+T
Sbjct: 56  AHKKGAGSTKNGRDSQGKRLGVKIYGDQVAKPGSIIVRQRGTKVTKFHAGKNVGLGKDYT 115

Query: 134 LFALKQG 140
           +F+L  G
Sbjct: 116 IFSLIDG 122