Miyakogusa Predicted Gene

Lj0g3v0214309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0214309.1 tr|B9HTE2|B9HTE2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_658207 PE=4 SV=1,34.48,0.000005,
,CUFF.13800.1
         (125 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g37470.1                                                        75   1e-14

>Glyma11g37470.1 
          Length = 70

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 55/71 (77%), Gaps = 5/71 (7%)

Query: 57  VSLTMSGPPKPDGKASSS--TVQDKTIGSSWKPPINTNSSKRITEKVNRTTKQSRT-SSN 113
           +SLT+   PK   KASSS  TVQDK++G+SWKPPI+T  SKR TEK NRTT+QS T  SN
Sbjct: 1   ISLTLPRSPKLGRKASSSSSTVQDKSLGNSWKPPIST--SKRTTEKNNRTTRQSVTLLSN 58

Query: 114 TTRENASPNIQ 124
            TRENASPNIQ
Sbjct: 59  NTRENASPNIQ 69