Miyakogusa Predicted Gene

Lj0g3v0213949.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0213949.1 tr|I0YUK2|I0YUK2_9CHLO RBP11-like subunits of RNA
polymerase OS=Coccomyxa subellipsoidea C-169 PE=4
,49.44,2e-19,RBP11-like subunits of RNA polymerase,DNA-directed RNA
polymerase, RBP11-like; RNA_pol_L_2,NULL; no ,CUFF.13782.1
         (104 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g51640.1                                                       183   3e-47
Glyma19g06080.1                                                       174   2e-44
Glyma12g01050.1                                                        55   2e-08
Glyma09g36280.1                                                        55   2e-08
Glyma06g21440.1                                                        48   2e-06

>Glyma18g51640.1 
          Length = 107

 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 99/107 (92%), Gaps = 3/107 (2%)

Query: 1   MEHGSHSDESKSTFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGS++D+SKSTFSL DEDHTFANA+R+TLNQDPRV+FCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  EPAREVLKDSCQHMMLMCQHVKGTFDKAVNDF---KSKKGGKDMDID 104
           +P+REVLKD+CQ +MLMCQHV+ TFDKAV+DF   K++K  +DMD++
Sbjct: 61  DPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKISKARKNNEDMDVE 107


>Glyma19g06080.1 
          Length = 106

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 91/104 (87%)

Query: 1   MEHGSHSDESKSTFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           ME GS+SD+SKSTFSL DEDHTFAN++R+TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MELGSYSDQSKSTFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  EPAREVLKDSCQHMMLMCQHVKGTFDKAVNDFKSKKGGKDMDID 104
           +PAREVLKD CQ +MLMCQHV+ TFD A+ DFK  +   + ++D
Sbjct: 61  DPAREVLKDGCQDLMLMCQHVRSTFDNAMTDFKRTQTNTEQEMD 104


>Glyma12g01050.1 
          Length = 116

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 12  STFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGEPA-REVLKDS 70
           ++F++  E+HT  N +R  L++DP V F GY +PHP   ++ +R+ TT + +  +    S
Sbjct: 31  ASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQS 90

Query: 71  CQHMMLMCQHVKGTFDKAVNDF 92
              +     H+K  F+  +  F
Sbjct: 91  VNDLDRELDHLKSAFEAEMLKF 112


>Glyma09g36280.1 
          Length = 116

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 12  STFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGEPA-REVLKDS 70
           ++F++  E+HT  N +R  L++DP V F GY +PHP   ++ +R+ TT + +  +    S
Sbjct: 31  ASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQS 90

Query: 71  CQHMMLMCQHVKGTFDKAVNDF 92
              +     H+K  F+  +  F
Sbjct: 91  INDLDRELDHLKSAFEAEMLKF 112


>Glyma06g21440.1 
          Length = 104

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 12 STFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT 58
          ++F++  E+HT  N +R  L++DP V F GY +PHP   ++ +R Q 
Sbjct: 45 ASFTIEREEHTIDNILRMQLHRDPNVLFVGYKLPHPLQYKIIVREQV 91