Miyakogusa Predicted Gene

Lj0g3v0212609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0212609.1 Non Chatacterized Hit- tr|I1IA29|I1IA29_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,96.08,3e-19,EUKARYOTIC TRANSLATION ELONGATION FACTOR 2,NULL;
TRANSLATION FACTOR,NULL; no description,NULL;
P-loo,NODE_51234_length_148_cov_192.520264.path1.1
         (52 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g40860.1                                                       105   1e-23
Glyma08g18110.1                                                       105   1e-23
Glyma15g40850.1                                                        84   2e-17
Glyma15g40840.1                                                        72   1e-13

>Glyma15g40860.1 
          Length = 843

 Score =  105 bits (261), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/52 (98%), Positives = 51/52 (98%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MVKFTAEELRRIMD KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52


>Glyma08g18110.1 
          Length = 843

 Score =  105 bits (261), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/52 (98%), Positives = 51/52 (98%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MVKFTAEELRRIMD KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52


>Glyma15g40850.1 
          Length = 1031

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/50 (84%), Positives = 44/50 (88%), Gaps = 1/50 (2%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAG-IIAQE 49
          MVKFT   LR IMD KHNIRNMSVIAHV+HGKSTLTDSLVAA+G IIAQE
Sbjct: 1  MVKFTTHRLRHIMDCKHNIRNMSVIAHVNHGKSTLTDSLVAASGNIIAQE 50


>Glyma15g40840.1 
          Length = 715

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/41 (85%), Positives = 36/41 (87%)

Query: 12 IMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          IMD  HN RNMSVIAHV+HGKSTL DSLVAAAGIIAQE AG
Sbjct: 9  IMDRNHNNRNMSVIAHVEHGKSTLIDSLVAAAGIIAQETAG 49