Miyakogusa Predicted Gene

Lj0g3v0212379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0212379.1 Non Chatacterized Hit- tr|I1Q6U9|I1Q6U9_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,35.48,4e-16,BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN,NULL;
STEROL REGULATORY ELEMENT-BINDING PROTEIN,NULL,CUFF.13669.1
         (173 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g13670.2                                                       321   2e-88
Glyma02g13670.1                                                       321   3e-88
Glyma01g09010.4                                                       312   1e-85
Glyma01g09010.1                                                       312   1e-85
Glyma01g09010.3                                                       311   2e-85
Glyma01g09010.2                                                       311   2e-85
Glyma17g08980.1                                                       117   4e-27
Glyma05g07490.1                                                       106   1e-23
Glyma08g28010.1                                                       103   1e-22
Glyma18g51080.1                                                        85   3e-17

>Glyma02g13670.2 
          Length = 335

 Score =  321 bits (822), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/173 (89%), Positives = 164/173 (94%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRNSHWRVQ+F GQP AV+NG GPVSPFP KFD+SNVSISPTML+G+QN IDPDQSRD
Sbjct: 116 MPWRNSHWRVQSFAGQPTAVKNGLGPVSPFPGKFDESNVSISPTMLNGSQNTIDPDQSRD 175

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ 120
           I++KTAERQPDLVSKGIPLPLAMHANMSVPVRSDGV AHPLQGT+S+AQSTECP TSEPQ
Sbjct: 176 IVNKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVLAHPLQGTVSNAQSTECPTTSEPQ 235

Query: 121 NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
           NQQDEL+VEGGTISISS YSQGLLNNLTQALQSAGLDLSQASISVQINLG RA
Sbjct: 236 NQQDELSVEGGTISISSAYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRA 288


>Glyma02g13670.1 
          Length = 336

 Score =  321 bits (822), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 154/173 (89%), Positives = 164/173 (94%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRNSHWRVQ+F GQP AV+NG GPVSPFP KFD+SNVSISPTML+G+QN IDPDQSRD
Sbjct: 117 MPWRNSHWRVQSFAGQPTAVKNGLGPVSPFPGKFDESNVSISPTMLNGSQNTIDPDQSRD 176

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ 120
           I++KTAERQPDLVSKGIPLPLAMHANMSVPVRSDGV AHPLQGT+S+AQSTECP TSEPQ
Sbjct: 177 IVNKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVLAHPLQGTVSNAQSTECPTTSEPQ 236

Query: 121 NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
           NQQDEL+VEGGTISISS YSQGLLNNLTQALQSAGLDLSQASISVQINLG RA
Sbjct: 237 NQQDELSVEGGTISISSAYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRA 289


>Glyma01g09010.4 
          Length = 336

 Score =  312 bits (799), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/173 (86%), Positives = 158/173 (91%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRNSHWRVQ+F GQP AV+NG GPVSPFP KFD+SN SISPTMLSGTQN IDP QSRD
Sbjct: 117 MPWRNSHWRVQSFAGQPTAVKNGLGPVSPFPVKFDESNASISPTMLSGTQNTIDPYQSRD 176

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ 120
           I++KTAERQPDLV+KG+PLPLAMHANMSVPVRSDGV AHPL GT+SD QSTECP TSEPQ
Sbjct: 177 IVNKTAERQPDLVNKGMPLPLAMHANMSVPVRSDGVLAHPLHGTVSDPQSTECPTTSEPQ 236

Query: 121 NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
           NQQDE TVEGGTISISS YSQGLLNNLTQALQSAGLDLSQASISVQINLG R 
Sbjct: 237 NQQDEFTVEGGTISISSAYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRG 289


>Glyma01g09010.1 
          Length = 336

 Score =  312 bits (799), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/173 (86%), Positives = 158/173 (91%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRNSHWRVQ+F GQP AV+NG GPVSPFP KFD+SN SISPTMLSGTQN IDP QSRD
Sbjct: 117 MPWRNSHWRVQSFAGQPTAVKNGLGPVSPFPVKFDESNASISPTMLSGTQNTIDPYQSRD 176

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ 120
           I++KTAERQPDLV+KG+PLPLAMHANMSVPVRSDGV AHPL GT+SD QSTECP TSEPQ
Sbjct: 177 IVNKTAERQPDLVNKGMPLPLAMHANMSVPVRSDGVLAHPLHGTVSDPQSTECPTTSEPQ 236

Query: 121 NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
           NQQDE TVEGGTISISS YSQGLLNNLTQALQSAGLDLSQASISVQINLG R 
Sbjct: 237 NQQDEFTVEGGTISISSAYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRG 289


>Glyma01g09010.3 
          Length = 335

 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 150/173 (86%), Positives = 158/173 (91%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRNSHWRVQ+F GQP AV+NG GPVSPFP KFD+SN SISPTMLSGTQN IDP QSRD
Sbjct: 116 MPWRNSHWRVQSFAGQPTAVKNGLGPVSPFPVKFDESNASISPTMLSGTQNTIDPYQSRD 175

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ 120
           I++KTAERQPDLV+KG+PLPLAMHANMSVPVRSDGV AHPL GT+SD QSTECP TSEPQ
Sbjct: 176 IVNKTAERQPDLVNKGMPLPLAMHANMSVPVRSDGVLAHPLHGTVSDPQSTECPTTSEPQ 235

Query: 121 NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
           NQQDE TVEGGTISISS YSQGLLNNLTQALQSAGLDLSQASISVQINLG R 
Sbjct: 236 NQQDEFTVEGGTISISSAYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRG 288


>Glyma01g09010.2 
          Length = 335

 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 150/173 (86%), Positives = 158/173 (91%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRNSHWRVQ+F GQP AV+NG GPVSPFP KFD+SN SISPTMLSGTQN IDP QSRD
Sbjct: 116 MPWRNSHWRVQSFAGQPTAVKNGLGPVSPFPVKFDESNASISPTMLSGTQNTIDPYQSRD 175

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ 120
           I++KTAERQPDLV+KG+PLPLAMHANMSVPVRSDGV AHPL GT+SD QSTECP TSEPQ
Sbjct: 176 IVNKTAERQPDLVNKGMPLPLAMHANMSVPVRSDGVLAHPLHGTVSDPQSTECPTTSEPQ 235

Query: 121 NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
           NQQDE TVEGGTISISS YSQGLLNNLTQALQSAGLDLSQASISVQINLG R 
Sbjct: 236 NQQDEFTVEGGTISISSAYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRG 288


>Glyma17g08980.1 
          Length = 566

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 110/188 (58%), Gaps = 20/188 (10%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSP---FPAKFDDSNVSISPTMLSGTQNMIDPDQ 57
           MPWRN+    + F  QP    NGS P SP   F +K D+ N++IS T+   TQN ++   
Sbjct: 336 MPWRNNDKPAETF--QPRGTDNGSSP-SPTLLFASKVDEKNITISQTIPGSTQN-VESGL 391

Query: 58  SRDILSKTAERQPDLVSKGIPLPLAMHANMSVPVR---SDGVPAHPLQGTLSDAQST--- 111
           S     KT +    +++K  P+P+    N   P +     GV +     + SDA+ T   
Sbjct: 392 SSATTPKTMDHHAGMMNKAFPIPIPSQLNFFTPTQIGGPGGVVSQLTHRSASDAEKTKYQ 451

Query: 112 ---EC---PATSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISV 165
              EC    AT+E + ++ ELT+EGG ISISSVYS+GLL+ LT ALQS+G+DLSQASISV
Sbjct: 452 PSVECQTMTATNE-KLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISV 510

Query: 166 QINLGNRA 173
           QI LG +A
Sbjct: 511 QIELGKQA 518


>Glyma05g07490.1 
          Length = 548

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 103/185 (55%), Gaps = 31/185 (16%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRN+    ++F  QP    NGS P               SPT+   TQN ++   S  
Sbjct: 335 MPWRNNDKPAESF--QPRGTDNGSSP---------------SPTIPGSTQN-VESGLSTA 376

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVR---SDGVPAHPLQGTLSDAQST------ 111
             SKT + Q   ++K  P+P+    N   P +     GV +     + SDA++T      
Sbjct: 377 TTSKTMDHQAGKMNKAFPIPIPSQLNFFTPTQIGGPGGVVSQLTHRSASDAENTKYQPSV 436

Query: 112 EC---PATSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQIN 168
           EC    AT+E + ++ ELT+EGG ISISSVYS+GLL+ LT ALQS+G+DLSQASISVQI 
Sbjct: 437 ECQTMTATNE-KLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIE 495

Query: 169 LGNRA 173
           LG +A
Sbjct: 496 LGKQA 500


>Glyma08g28010.1 
          Length = 339

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 33/191 (17%)

Query: 2   PWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRDI 61
           PWRN H   +N      A +NGS          D+ N ++SP +    QN+I+ D S   
Sbjct: 115 PWRNHHGPAENTTDPSQASQNGS---------VDEKNNNVSPLLPKNVQNLIESDFSMTT 165

Query: 62  LSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ- 120
           + K  +  P   ++ +PLP+ M  +M  P+ S G+    LQ  +S+      P+ ++PQ 
Sbjct: 166 IQK--DHTPGSTTEAVPLPMQMRLDMFDPIVSSGMATQHLQEPVSNVN---MPSHTQPQL 220

Query: 121 ------------------NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQAS 162
                              +Q+EL +E G+ SISS YSQG+L++LTQAL S+G+D+SQ +
Sbjct: 221 WLNKQSKGNYIVPHNDTMKEQEELVIESGSDSISSAYSQGILDSLTQALHSSGVDMSQTN 280

Query: 163 ISVQINLGNRA 173
           +SVQI++G RA
Sbjct: 281 VSVQIDVGRRA 291


>Glyma18g51080.1 
          Length = 336

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 33/188 (17%)

Query: 2   PWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRDI 61
           PWRN+H   +N      A +NGS          D+ N ++SP +    QN I+ D S   
Sbjct: 112 PWRNNHGPAENTTDPSQATQNGS---------VDEKNNNVSPLLPKNVQNPIESDFSMTT 162

Query: 62  LSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ- 120
           + K     P   ++ +PLP+ M  +M  PV S  +    L   L    +    + ++PQ 
Sbjct: 163 IQKG--NIPGSTTEAVPLPMQMRLDMFDPVVSSSMATQHL---LEPVSNVNMLSHTQPQL 217

Query: 121 ------------------NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQAS 162
                              +Q+EL  E G+ SISS YSQG+L++LTQAL S+G+D+SQ +
Sbjct: 218 WLDKRNKGNYILPHNDTMKEQEELVNESGSDSISSAYSQGILDSLTQALHSSGVDMSQTN 277

Query: 163 ISVQINLG 170
           +SVQI++G
Sbjct: 278 VSVQIDVG 285