Miyakogusa Predicted Gene

Lj0g3v0211609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0211609.1 Non Chatacterized Hit- tr|C5XQY9|C5XQY9_SORBI
Putative uncharacterized protein Sb03g027630
OS=Sorghu,60.81,3e-19,RINGv,Zinc finger, RING-CH-type; PREDICTED
PROTEIN,NULL; MEMBRANE ASSOCIATED RING FINGER,NULL; no
de,NODE_51376_length_471_cov_106.885353.path2.1
         (105 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g36020.1                                                       212   6e-56
Glyma18g02420.1                                                       212   9e-56
Glyma05g31600.1                                                       179   8e-46
Glyma05g08220.2                                                       112   6e-26
Glyma05g08220.1                                                       112   6e-26
Glyma17g12750.4                                                       110   4e-25
Glyma17g12750.3                                                       110   4e-25
Glyma17g12750.2                                                       110   4e-25
Glyma17g12750.1                                                       110   4e-25
Glyma15g00320.2                                                       109   6e-25
Glyma15g00320.1                                                       109   6e-25
Glyma13g45010.1                                                       109   6e-25
Glyma15g00320.3                                                       103   5e-23
Glyma08g14820.1                                                        62   1e-10
Glyma02g11960.1                                                        47   3e-06
Glyma01g05800.1                                                        47   5e-06

>Glyma11g36020.1 
          Length = 323

 Score =  212 bits (540), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 100/105 (95%), Positives = 102/105 (97%)

Query: 1   MADHSDSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR 60
           MADHSDSSPLVPP PL+D  EIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR
Sbjct: 1   MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR 60

Query: 61  DCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           +CLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF
Sbjct: 61  ECLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105


>Glyma18g02420.1 
          Length = 323

 Score =  212 bits (539), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 100/105 (95%), Positives = 102/105 (97%)

Query: 1   MADHSDSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR 60
           MADHSDSSPLVPP PL+D  EIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR
Sbjct: 1   MADHSDSSPLVPPLPLADPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR 60

Query: 61  DCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           +CLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF
Sbjct: 61  ECLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105


>Glyma05g31600.1 
          Length = 324

 Score =  179 bits (453), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 2/101 (1%)

Query: 5   SDSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLD 64
           +DSSPL+PP P++   EIDLE GPSEQIQCRICLETDGR+FI PCKCKGTSKYVHR+CLD
Sbjct: 2   TDSSPLIPPSPVTVT-EIDLEEGPSEQIQCRICLETDGRNFIVPCKCKGTSKYVHRECLD 60

Query: 65  HWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           HWRA+KEGFAFAHCTTCKAPYHLRVH  A R+WRT KFRFF
Sbjct: 61  HWRAVKEGFAFAHCTTCKAPYHLRVH-GAYRQWRTFKFRFF 100


>Glyma05g08220.2 
          Length = 309

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 73/118 (61%), Gaps = 15/118 (12%)

Query: 1   MADHSDSSPLVPPQPLSDAF----------EIDLEAGPSEQIQCRICLETDGR---DFIA 47
           M + SDS PL+  Q   D            E D+EAG      CRICLE+D     + I+
Sbjct: 13  MQNPSDSDPLLHNQEEEDGSPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDELIS 70

Query: 48  PCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV    D  WR +KFR F
Sbjct: 71  PCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRLF 128


>Glyma05g08220.1 
          Length = 309

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 73/118 (61%), Gaps = 15/118 (12%)

Query: 1   MADHSDSSPLVPPQPLSDAF----------EIDLEAGPSEQIQCRICLETDGR---DFIA 47
           M + SDS PL+  Q   D            E D+EAG      CRICLE+D     + I+
Sbjct: 13  MQNPSDSDPLLHNQEEEDGSPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDELIS 70

Query: 48  PCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV    D  WR +KFR F
Sbjct: 71  PCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRLF 128


>Glyma17g12750.4 
          Length = 311

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 17/120 (14%)

Query: 1   MADHSDSSPLVPPQ--------PLSDAF----EIDLEAGPSEQIQCRICLETDGR---DF 45
           M + SDS PL+  Q        P S       E D+EAG      CRICLE+D     + 
Sbjct: 13  MQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDEL 70

Query: 46  IAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           I+PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV    D  WR +KFR F
Sbjct: 71  ISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDNTWRKIKFRLF 130


>Glyma17g12750.3 
          Length = 311

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 17/120 (14%)

Query: 1   MADHSDSSPLVPPQ--------PLSDAF----EIDLEAGPSEQIQCRICLETDGR---DF 45
           M + SDS PL+  Q        P S       E D+EAG      CRICLE+D     + 
Sbjct: 13  MQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDEL 70

Query: 46  IAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           I+PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV    D  WR +KFR F
Sbjct: 71  ISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDNTWRKIKFRLF 130


>Glyma17g12750.2 
          Length = 311

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 17/120 (14%)

Query: 1   MADHSDSSPLVPPQ--------PLSDAF----EIDLEAGPSEQIQCRICLETDGR---DF 45
           M + SDS PL+  Q        P S       E D+EAG      CRICLE+D     + 
Sbjct: 13  MQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDEL 70

Query: 46  IAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           I+PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV    D  WR +KFR F
Sbjct: 71  ISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDNTWRKIKFRLF 130


>Glyma17g12750.1 
          Length = 311

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 17/120 (14%)

Query: 1   MADHSDSSPLVPPQ--------PLSDAF----EIDLEAGPSEQIQCRICLETDGR---DF 45
           M + SDS PL+  Q        P S       E D+EAG      CRICLE+D     + 
Sbjct: 13  MQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDEL 70

Query: 46  IAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           I+PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV    D  WR +KFR F
Sbjct: 71  ISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDNTWRKIKFRLF 130


>Glyma15g00320.2 
          Length = 257

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query: 29  SEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLR 88
           ++Q QCRICL+  G D IAPC CKGT KYVHR CLD+WR+ KEGFAF+HCT C+A + LR
Sbjct: 65  ADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 124

Query: 89  VHVAADRKWRTLKFRFF 105
            +V  DR W  LKF+F 
Sbjct: 125 ANVPPDRWWLRLKFQFL 141


>Glyma15g00320.1 
          Length = 257

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query: 29  SEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLR 88
           ++Q QCRICL+  G D IAPC CKGT KYVHR CLD+WR+ KEGFAF+HCT C+A + LR
Sbjct: 65  ADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 124

Query: 89  VHVAADRKWRTLKFRFF 105
            +V  DR W  LKF+F 
Sbjct: 125 ANVPPDRWWLRLKFQFL 141


>Glyma13g45010.1 
          Length = 259

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query: 29  SEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLR 88
           ++Q QCRICL+  G D IAPC CKGT KYVHR CLD+WR+ KEGFAF+HCT C+A + LR
Sbjct: 67  ADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 126

Query: 89  VHVAADRKWRTLKFRFF 105
            +V  DR W  LKF+F 
Sbjct: 127 ANVPPDRWWLRLKFQFL 143


>Glyma15g00320.3 
          Length = 256

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 29  SEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLR 88
           ++Q QCRICL+  G D IAPC CKGT KYVHR CLD+WR+ K GFAF+HCT C+A + LR
Sbjct: 65  ADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTK-GFAFSHCTECRAVFILR 123

Query: 89  VHVAADRKWRTLKFRFF 105
            +V  DR W  LKF+F 
Sbjct: 124 ANVPPDRWWLRLKFQFL 140


>Glyma08g14820.1 
          Length = 76

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 32/37 (86%), Gaps = 1/37 (2%)

Query: 69  IKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           ++EGFAFAHCTTCKAPYHL VH +A R+WRT K RFF
Sbjct: 1   LQEGFAFAHCTTCKAPYHLSVH-SAYRQWRTFKLRFF 36


>Glyma02g11960.1 
          Length = 289

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 23  DLEAGPSEQ-----IQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFA 76
           D E G  E+      +CRIC E DG  +   PC C G+ KY HR C+ HW   K      
Sbjct: 55  DGEGGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDIT-- 112

Query: 77  HCTTCKAPYH 86
            C  C  PY 
Sbjct: 113 -CEICHQPYQ 121


>Glyma01g05800.1 
          Length = 286

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 30  EQIQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYH 86
           +  +CRIC E DG  +   PC C G+ KY HR C+ HW   K       C  C  PY 
Sbjct: 64  QMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDIT---CEICHQPYQ 118