Miyakogusa Predicted Gene

Lj0g3v0208729.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208729.1 Non Chatacterized Hit- tr|B6TCD4|B6TCD4_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,52.5,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; COILIN
P80,Coilin,CUFF.14321.1
         (599 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g37740.1                                                       396   e-110
Glyma18g01670.1                                                       321   2e-87

>Glyma11g37740.1 
          Length = 637

 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/468 (50%), Positives = 283/468 (60%), Gaps = 57/468 (12%)

Query: 184 FEGLQEEAGLHVTTSREDDGDQFGSGAVCVEXXXXXXXXXXXXXXXXXXXXXXXXXXXMS 243
            EGLQEE+G   T S +D  DQ    AV VE                           +S
Sbjct: 121 IEGLQEESGGEETMSHKDGDDQL-EDAVYVESESDRNVVSKKRKASKKLKSPSQKKIKLS 179

Query: 244 TTDNLALITEVHKDESGRFKGHIHQQSSVAEKD-----------------NKSSNDQSEP 286
           T +NL++I +VH++E+G  +GHIH Q SV +KD                 NK  ND+S+P
Sbjct: 180 TAENLSVIPQVHEEENGSSEGHIHHQLSVVKKDKKKHSNLSSQSNKSSNLNKQKNDKSDP 239

Query: 287 TNDKTRFLQPQDESETKKVPXXXXXXXXXXXX----XXXXXXXXXXXXNTSPVLEKDEQ- 341
           T+D+TRF+QPQDESETKK+P                            + +PVLEKD Q 
Sbjct: 240 TSDETRFVQPQDESETKKLPSRSARRKKAKRRWLRELKLENEMKEKKPHQTPVLEKDGQE 299

Query: 342 LPIKDNNCKVSDVNQQXXXXXXXXDDVIPVEIRPGHIRFQPLRKDQE--VPQNQFPVETF 399
           LPIKDNNC VSDV+Q+        DD++PVEIRPGHIRF+PL+KDQ+  V Q+QFPVE F
Sbjct: 300 LPIKDNNCVVSDVHQKPDEESGEEDDIVPVEIRPGHIRFEPLKKDQDQAVTQDQFPVEIF 359

Query: 400 CWNGITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQKAEREHLSNPVDFEKLTP-YTS 458
            WNGIT+KKKGQKWGKER+S  KQD +E+SSQ+    + AE+E  SN +DF+KL P YTS
Sbjct: 360 QWNGITNKKKGQKWGKERMSFRKQDGYEHSSQDCPTVRNAEKEQPSNAIDFDKLKPYYTS 419

Query: 459 LPKEGDVIAYRLIELSSSWTPELSSFRVGKISQYDAKSNRICLEPVSEFPFVLEEKTDQE 518
           LPKEGDVIAYRLIEL++SWTPELSSFRVGKIS+YDAKSNRI LEPV E+PF  ++K D++
Sbjct: 420 LPKEGDVIAYRLIELTASWTPELSSFRVGKISRYDAKSNRIWLEPVLEYPFDFKKKIDED 479

Query: 519 TSSGQPDPPLYQEDGSLEVEYTSLADVRMVKHXXXXXXXXXXXXXXLVN----------- 567
            SS Q +P  YQE+GSLE+EYTSLADVRMVKH               V            
Sbjct: 480 ASSVQYNPSPYQENGSLEIEYTSLADVRMVKHGNPDLKTVVVSSDAWVKTTKATNDITKE 539

Query: 568 --PPKATNGSTDEK------------------PAKENGGVSVWDEINE 595
               KATNGSTDEK                   AKENG V+VWDEINE
Sbjct: 540 KLAAKATNGSTDEKLAADQTTMGSCQPERGHITAKENGEVNVWDEINE 587



 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 129/166 (77%), Gaps = 13/166 (7%)

Query: 1   MAAPARLRLLFEDRHMLSKSKTKEGLNRCWFLLKPQHTTISDLTSNLLDAFRLHRTCPGG 60
           MA   RLR++FEDR MLSKSK K+GL RCWFLLKPQHT ISD+ S+LL+ FRLHRTCP G
Sbjct: 1   MAETVRLRVVFEDRGMLSKSKKKQGLKRCWFLLKPQHTAISDVASHLLNTFRLHRTCPHG 60

Query: 61  IILSMDGFVLPSFESTCILKDNDIVWVKRKGSVSTDD-KPALLPPLSCGRQSIDLPKLLS 119
           I+LSMDGFVLPSFESTCILKD DIV VKRKGSVSTDD KPA+LPP +C  QSI+LPKLL+
Sbjct: 61  IVLSMDGFVLPSFESTCILKDKDIVCVKRKGSVSTDDNKPAMLPPAACENQSIELPKLLT 120

Query: 120 IEGVQEETPEHLRIEQEETRGDETASGEDEDEQIGSGVVCVESKLD 165
           IEG+QEE+            G+ET S +D D+Q+   V  VES+ D
Sbjct: 121 IEGLQEESG-----------GEETMSHKDGDDQLEDAVY-VESESD 154


>Glyma18g01670.1 
          Length = 559

 Score =  321 bits (822), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 220/496 (44%), Positives = 264/496 (53%), Gaps = 85/496 (17%)

Query: 183 RFEGLQEE-AGLHVTTSREDDGDQFGSGAVCVEXXXXXXXXXXXXXXXXXXXXXXXXXXX 241
           + EGLQEE +G   T S++DD DQ    AV VE                           
Sbjct: 24  KIEGLQEEESGAEETMSQKDDDDQL-EDAVYVESKSDGNVVFKKRKASKKLKSPSQKKIK 82

Query: 242 MSTTDNLALITEVHK----------DESGRFKGHIHQQSSVAEKD---NKSSNDQSEPT- 287
           +ST +NL++  +VH+          +E+G F G+IH Q S+  K    NK  ND+S+PT 
Sbjct: 83  LSTAENLSVTPKVHEKENGSSEGHEEENGSFDGYIHHQLSLPNKSSNLNKQKNDKSDPTI 142

Query: 288 -----NDKTRFLQ-----------PQDESETKKVPXXXXXXXXXXXXXXXXXXXXXXXXN 331
                + K R  Q           P   +  KK                          +
Sbjct: 143 NTSISSQKNRGCQVFIYLILFCQLPSRSARRKKAKRRWLRELKLEKEKEKEELLHSSNND 202

Query: 332 TSP---------------VLEKDEQ-LPIKDNNCKVSDVNQQXXXXXXXXDDVIPVEIRP 375
            SP               VLEK  Q LPI DNNC VSDV+QQ        DD+ PVEIRP
Sbjct: 203 CSPLPASSCHLQRLHQTPVLEKGGQELPINDNNCVVSDVHQQPDEESEEEDDIAPVEIRP 262

Query: 376 GHIRFQPLRKDQEVPQN-QFPVETFCWNGITSKKKGQKWGKERISSWKQDDHENSSQEWR 434
           GHIRF+PL+K      + +F  ETF WNGIT+KKKGQKWGKER+   KQD +E+S Q+  
Sbjct: 263 GHIRFEPLKKGLHADLSYKFLKETFQWNGITNKKKGQKWGKERMPFRKQDGYEDSGQDCP 322

Query: 435 AAQKAEREHLSNPVDFEKLTPYTSLPKEGDVIAYRLIELSSSWTPELSSFRVGKISQYDA 494
             Q AE+E  SN +DF+KL  YTSLPKEGDVIAYRLIEL++SWTPELSSFRVGKIS+YDA
Sbjct: 323 TVQNAEKEQTSNVIDFDKLKHYTSLPKEGDVIAYRLIELTASWTPELSSFRVGKISRYDA 382

Query: 495 KSNRICLEPVSEFPFVLEEKTDQETSSGQPDPPLYQEDGSLEVEYTSLADVRMVKHXXXX 554
           KSNRI LEPV E+PF  ++K D++ SS Q DP  YQEDGSLE+EYT LADVRMVKH    
Sbjct: 383 KSNRIWLEPVLEYPFDFKKKIDEDASSVQYDPSPYQEDGSLEIEYTLLADVRMVKHGIPD 442

Query: 555 XXXXXXXXXXLVNPPKATN-------------GSTDEK------------------PAKE 583
                     LVNP KATN             GST EK                   AKE
Sbjct: 443 LKSDA-----LVNPTKATNDITNEKLAAKAINGSTGEKLAGDQTTVGSCHPERGHITAKE 497

Query: 584 NGGVSVWDEINEALNA 599
           NG V+VWD+INEAL A
Sbjct: 498 NGEVNVWDKINEALKA 513