Miyakogusa Predicted Gene

Lj0g3v0208229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208229.1 tr|G7J6N4|G7J6N4_MEDTR ATP-dependent DNA helicase
recG OS=Medicago truncatula GN=MTR_3g079920 PE=4
S,68.57,7e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.13346.1
         (70 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g21660.1                                                       123   5e-29
Glyma09g20340.1                                                       110   3e-25

>Glyma07g21660.1 
          Length = 322

 Score =  123 bits (308), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/70 (81%), Positives = 64/70 (91%)

Query: 1   MLEGLGTQIEKDGLLDKYRRPENNAVCTEEWSCLTKKVLELLPYTLTSSQLQAVSEIIWD 60
           MLE LG+Q+EKD LLDKYRRP NNAVCTE+WS LTKKVL++LPYTLT+SQ  AVSEIIWD
Sbjct: 72  MLESLGSQMEKDVLLDKYRRPVNNAVCTEQWSSLTKKVLDVLPYTLTTSQQLAVSEIIWD 131

Query: 61  LKRPVPMNRL 70
           L+RPVPMNRL
Sbjct: 132 LQRPVPMNRL 141


>Glyma09g20340.1 
          Length = 169

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 58/69 (84%)

Query: 1   MLEGLGTQIEKDGLLDKYRRPENNAVCTEEWSCLTKKVLELLPYTLTSSQLQAVSEIIWD 60
           MLE LGTQIEKD LLDKYRRP NN VCT++WS LTKK LE+LPYT T+SQ   VSEII D
Sbjct: 50  MLESLGTQIEKDVLLDKYRRPVNNVVCTKQWSSLTKKFLEVLPYTFTTSQQLVVSEIIED 109

Query: 61  LKRPVPMNR 69
           LKRPVPMNR
Sbjct: 110 LKRPVPMNR 118