Miyakogusa Predicted Gene

Lj0g3v0208169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208169.1 Non Chatacterized Hit- tr|I1IQZ4|I1IQZ4_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,32.39,2e-18,no
description,Methyl-CpG DNA binding; seg,NULL; DNA-binding
domain,DNA-binding, integrase-type; MBD,CUFF.13366.1
         (716 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g10800.1                                                       295   1e-79
Glyma04g10970.2                                                       210   3e-54
Glyma04g10970.1                                                       210   3e-54
Glyma04g10960.1                                                       137   6e-32
Glyma15g05970.1                                                        98   3e-20
Glyma08g19020.1                                                        57   6e-08

>Glyma06g10800.1 
          Length = 1035

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 229/556 (41%), Positives = 271/556 (48%), Gaps = 109/556 (19%)

Query: 25  QPELHSLSFSSATNGGTNHHFD---IPKIQIDRSIFNESAGSRKQTYXXXXXXXXXXXXX 81
           QPEL++LS S AT+    +  D   IPKI  DRS FNESAGSRKQTY             
Sbjct: 27  QPELYTLSLSGATHRHRRNSDDDSVIPKI--DRSNFNESAGSRKQTYSKLRLNKRKQNPA 84

Query: 82  XXXXXXXXXXXFRIP------PEPENSDVVSFLKGLFGVVPLRG---ANNVNPHDXXXXX 132
                      F IP       E ENS +++ L  LFGV PLR     NN  P       
Sbjct: 85  VPASSS-----FHIPLHISEPEEEENSRIIALLHQLFGVEPLRNNAPRNNDAPERRLVPV 139

Query: 133 XXXXXX----XXGTLHNVPIDVV-GGSG------------------LNVPVAVVDGSSSQ 169
                           NVPIDVV  GS                   +  P  V    +S 
Sbjct: 140 HVEFKQPPPISVALFQNVPIDVVPDGSQRKRKRGRPRKDENSVTVFVEEPTKVTKEENSL 199

Query: 170 TKSRKRGRPRKNQEAVVSVPVGNGXXXXXXXXXXXXXXXXXXXXKNGLVVGDVGDPFVEQ 229
           T   +  +   N+E  V V  GNG                         VG   D F  +
Sbjct: 200 TVFVEEPKKVTNEEKSVKVN-GNGEGNAAVATATVNES-----------VGLDEDLFEVE 247

Query: 230 LIERTQGLVTESQMREFMESLEGVWASDRKKRRIVDARILCDLLPPGWKLVLILQRRAGR 289
           L  R QGL TESQ+ EF+E+L G WAS RKKRRIV A  L D+LP GWK+V+I+ RRAGR
Sbjct: 248 LKRRAQGLETESQVMEFLETLNGEWASQRKKRRIVPATELGDMLPAGWKIVIIVMRRAGR 307

Query: 290 FSVLCRFYKSPDGHQFESYKEVCTHLSSNNG------------------NFAMASENHQH 331
            S +CR Y SPDGHQFES KE   +L S +G                  + +M   +   
Sbjct: 308 ASAVCRRYVSPDGHQFESCKEASAYLLSVSGVQDRSHLKSSYTDGAQQLSSSMNRASESS 367

Query: 332 VGHVPT-SMETDANA---------ISAYHEKQTSIASSIGTEKQASIASSIGTEKLNIYD 381
           VGHVPT  M+T ANA         I + HEKQ  ++SSIG+E                  
Sbjct: 368 VGHVPTGDMKTVANASYLSSAGAPIDSSHEKQPLVSSSIGSE------------------ 409

Query: 382 GNSNSHLALGHKLGDAG----RDSD-QTEDKQPLKADKNDANSVQGCSLKQDNEPHENS- 435
            N  S LALG KLGDA     RD D QTEDKQ  KADKND NSVQ CSL +D   +ENS 
Sbjct: 410 -NFISDLALGCKLGDATGGAFRDFDHQTEDKQLSKADKNDENSVQECSLVEDRACNENSE 468

Query: 436 --VGAIQASDAAVNLYIPLVFTSPLSNNDIGIDQLSDERNAVTRTNSGIYNFDGQDRNTV 493
             VG +++SDAA NLYIPLVF++P SNN+    QLSDE NA T    G+ NF   DRNT 
Sbjct: 469 KLVGVVESSDAACNLYIPLVFSTPFSNNNSDNGQLSDEINASTCMKGGVSNFASHDRNTG 528

Query: 494 SYETVPCGKDQAHFDN 509
            +ETV CG  +AH DN
Sbjct: 529 CHETVSCGNVRAHVDN 544



 Score =  209 bits (531), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 145/221 (65%), Gaps = 21/221 (9%)

Query: 515 TQTSMLKDSAVGSLFDNYFPSGGVPD-------------------ASGSGGVDFIPGLKV 555
           TQTS LKDSA  ++FD+   S  + +                   AS  GG DF   LK+
Sbjct: 653 TQTSELKDSAEENIFDSDLFSSSIDERTHVHSGYISNVSFSSCTHASEYGGFDFASDLKL 712

Query: 556 GKDVNDNHVYPNEEVVTSYLQKRSSSDDQMFTMDNLLGGSFEGNLFPLANNHHPSAFQDN 615
            KDV+DNH+  NEE VT  LQ+RSS +DQ   MDN+L  S E NLF L  N H  AF DN
Sbjct: 713 AKDVSDNHILSNEEAVTRCLQERSSLNDQNSMMDNMLHRSSESNLFALTGNQHSCAFHDN 772

Query: 616 MNITAGTFDVLKSVDAGCVEPQLGIISSSNVVAADACTSARVMQGTSEGRVSVPLGGSMS 675
           +NI+ GTFD LK+VDAGC+EPQLGI+S SN +A DA T+A +MQG  +G VSVPLGG++ 
Sbjct: 773 VNISDGTFDALKAVDAGCMEPQLGIVSCSN-IAVDAYTTASIMQGKPQGCVSVPLGGNIL 831

Query: 676 NCFDKQCDDDVNKEKKSCLSEKAKSEVEMFQNDSMGMSKFQ 716
           N F+K  DD VNK  KSCL E A++EVE+FQ +SMG+ KF+
Sbjct: 832 N-FEKPSDDGVNKANKSCLPETAQNEVEIFQTESMGLPKFR 871


>Glyma04g10970.2 
          Length = 223

 Score =  210 bits (535), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/222 (54%), Positives = 144/222 (64%), Gaps = 22/222 (9%)

Query: 515 TQTSMLKDSAVGSLFDNYFPSGGV--------------------PDASGSGGVDFIPGLK 554
           TQTS LKDSA  ++FD+   S  +                     DAS  GG DF   LK
Sbjct: 4   TQTSELKDSAEENIFDSDLFSSSIDERTRVHSGYISNVSFSSCTQDASEYGGFDFASDLK 63

Query: 555 VGKDVNDNHVYPNEEVVTSYLQKRSSSDDQMFTMDNLLGGSFEGNLFPLANNHHPSAFQD 614
           + KDV+DNH+  NEE VT  L++RSS +DQ   MDNLL  S E NLF L  N H  AF D
Sbjct: 64  LDKDVSDNHILSNEEAVTRSLRERSSLNDQNSMMDNLLHRSSESNLFALTGNQHSCAFHD 123

Query: 615 NMNITAGTFDVLKSVDAGCVEPQLGIISSSNVVAADACTSARVMQGTSEGRVSVPLGGSM 674
           N+NI+ GTFD LK VDAGC+EPQLGI+S SN +A DA T+A +MQG  +G VSVPLGGS+
Sbjct: 124 NVNISDGTFDALKVVDAGCMEPQLGIVSCSN-IAVDAYTTASIMQGKPQGCVSVPLGGSI 182

Query: 675 SNCFDKQCDDDVNKEKKSCLSEKAKSEVEMFQNDSMGMSKFQ 716
            N F+K  DD VNK  KSCL E A++EVEMFQ DSMG+ KF+
Sbjct: 183 LN-FEKPSDDGVNKANKSCLPETAQNEVEMFQTDSMGLPKFR 223


>Glyma04g10970.1 
          Length = 223

 Score =  210 bits (535), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/222 (54%), Positives = 144/222 (64%), Gaps = 22/222 (9%)

Query: 515 TQTSMLKDSAVGSLFDNYFPSGGV--------------------PDASGSGGVDFIPGLK 554
           TQTS LKDSA  ++FD+   S  +                     DAS  GG DF   LK
Sbjct: 4   TQTSELKDSAEENIFDSDLFSSSIDERTRVHSGYISNVSFSSCTQDASEYGGFDFASDLK 63

Query: 555 VGKDVNDNHVYPNEEVVTSYLQKRSSSDDQMFTMDNLLGGSFEGNLFPLANNHHPSAFQD 614
           + KDV+DNH+  NEE VT  L++RSS +DQ   MDNLL  S E NLF L  N H  AF D
Sbjct: 64  LDKDVSDNHILSNEEAVTRSLRERSSLNDQNSMMDNLLHRSSESNLFALTGNQHSCAFHD 123

Query: 615 NMNITAGTFDVLKSVDAGCVEPQLGIISSSNVVAADACTSARVMQGTSEGRVSVPLGGSM 674
           N+NI+ GTFD LK VDAGC+EPQLGI+S SN +A DA T+A +MQG  +G VSVPLGGS+
Sbjct: 124 NVNISDGTFDALKVVDAGCMEPQLGIVSCSN-IAVDAYTTASIMQGKPQGCVSVPLGGSI 182

Query: 675 SNCFDKQCDDDVNKEKKSCLSEKAKSEVEMFQNDSMGMSKFQ 716
            N F+K  DD VNK  KSCL E A++EVEMFQ DSMG+ KF+
Sbjct: 183 LN-FEKPSDDGVNKANKSCLPETAQNEVEMFQTDSMGLPKFR 223


>Glyma04g10960.1 
          Length = 291

 Score =  137 bits (344), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 128/286 (44%), Gaps = 20/286 (6%)

Query: 25  QPELHSLSFSSATNGGTNHHFD---IPKIQIDRSIFNESAGSRKQTYXXXXXXXXXXXXX 81
           QPEL++LS S AT+    +  D   IPKI  DRS FNESAGSRKQTY             
Sbjct: 13  QPELYTLSLSGATHCHRRNSDDDSVIPKI--DRSNFNESAGSRKQTYSKLRLNKRKQNPA 70

Query: 82  XXXXXXXXXXXFRIP------PEPENSDVVSFLKGLFGVVPLRGANNVNPHDXXXXXXXX 135
                      F IP       E ENS +V+ L+ LFGV PLR A   +  +        
Sbjct: 71  VPASSS-----FHIPLHISEPEEEENSRIVALLQQLFGVEPLRNAPRNDAAERRLVPVQV 125

Query: 136 XXXXX----GTLHNVPIDVVGGSGLNVPVAVVDGSSSQTKSRKRGRPRKNQEAVVSVPVG 191
                        NVPIDVV  S               + +     P+K  +   SV V 
Sbjct: 126 DFKQPPPMFAAFQNVPIDVVADSSQRKRKRGRPRKDENSVTVFVEEPKKVTKEENSVTVF 185

Query: 192 NGXXXXXXXXXXXXXXXXXXXXKNGLVVGDVGDPFVEQLIERTQGLVTESQMREFMESLE 251
                                      VG   DPF  +L  RTQGL TE Q+ EF+E+L 
Sbjct: 186 VEEPKKVNGNGEVNAAVATTTTTVNETVGLDEDPFEVELKRRTQGLETEPQVVEFLETLN 245

Query: 252 GVWASDRKKRRIVDARILCDLLPPGWKLVLILQRRAGRFSVLCRFY 297
           G WAS RKKRRIV A  L DLLP GWK+V+I  RRAGR S +CR Y
Sbjct: 246 GEWASQRKKRRIVPASELGDLLPAGWKIVIITMRRAGRASAVCRRY 291


>Glyma15g05970.1 
          Length = 443

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 65/104 (62%)

Query: 218 VVGDVGDPFVEQLIERTQGLVTESQMREFMESLEGVWASDRKKRRIVDARILCDLLPPGW 277
           ++ +  DPF E+L  RT+GL  E ++  F+  L G W S RKKRRIVD+    D+LP  W
Sbjct: 161 LLANSQDPFAEELKRRTEGLHNEEELLGFLRDLPGQWGSRRKKRRIVDSADFGDVLPLSW 220

Query: 278 KLVLILQRRAGRFSVLCRFYKSPDGHQFESYKEVCTHLSSNNGN 321
           K++L L+R+ GR  + CR Y SP G  F S KEV ++L S  GN
Sbjct: 221 KILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLGN 264


>Glyma08g19020.1 
          Length = 254

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 41/75 (54%), Gaps = 14/75 (18%)

Query: 224 DPFVEQLIERTQGLVTESQMREFMESLEGVWASDRKKRRIVDARILC-DLLPPGWKLVLI 282
           DPF E+L  RT             E L G W S RKKRRIVDA     D+LP  WK++L 
Sbjct: 173 DPFAEELKRRT-------------EDLPGQWGSRRKKRRIVDAADFGGDVLPLSWKILLG 219

Query: 283 LQRRAGRFSVLCRFY 297
           L+R+ GR  + CR Y
Sbjct: 220 LKRKDGRAWIYCRRY 234