Miyakogusa Predicted Gene

Lj0g3v0205479.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205479.1 Non Chatacterized Hit- tr|J3M6T5|J3M6T5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G2,43.32,0.00000000000001,seg,NULL,CUFF.13128.1
         (328 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g00670.1                                                       195   6e-50

>Glyma11g00670.1 
          Length = 362

 Score =  195 bits (495), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 155/322 (48%), Positives = 176/322 (54%), Gaps = 38/322 (11%)

Query: 26  ALCPADELFYKGQLLPLHLSPRISMVRXXXXXXXXXXXXXXXXXXXPRDXXXXXXXXXXD 85
           ALCPADELFYKGQLLPLHLS RISMVR                    RD          D
Sbjct: 53  ALCPADELFYKGQLLPLHLSQRISMVRTLLLSSSSTSSTSTTA----RDSTGSSSSFTSD 108

Query: 86  LAIFPDCDSSRPSSVA-EDDELKRLHIHNSNDNNPLFQPNIKKTHKYFSLSRFSSVFRKE 144
           LA+FPDCDSSRPSSV  +DD+ KRLH  N + ++   Q ++KKT KYFS SRFSSVFRKE
Sbjct: 109 LALFPDCDSSRPSSVTDQDDDFKRLHNPNPSSSSISKQDHVKKTLKYFSFSRFSSVFRKE 168

Query: 145 NVA-KTRDPENATGSS----VKRMSATAKEVIRKYLKKVKPLYDKLXXXXXXRQGRTGD- 198
           N   KTRD +NA  S+    VKRMS TA+EVIRKY KKVKPLY+KL      +Q RTG  
Sbjct: 169 NTTTKTRDLDNAASSNNNSSVKRMSVTAREVIRKYFKKVKPLYEKLSQKQQQQQHRTGGE 228

Query: 199 ----LSVRTG-------DLTVEGSILSLLAKTERSGKEXXXXXXXXXMESGGGAGKRGWK 247
               L+   G         T   S+LSLL KTERS K+              G  KRG K
Sbjct: 229 AGVLLTAEAGATTTTTTTTTTTTSVLSLLTKTERSTKQTE------------GTNKRGRK 276

Query: 248 E-NVGVLSHSFSGNXXXXXXXXXXXXXXXXXXXXXXXXX---XXXQKGVPAGVGGRDNSS 303
           + +V  LSHSFSGN                                    AG+   D S+
Sbjct: 277 DSSVTALSHSFSGNLRYPRRRRSCVSSCPSSMRSSPNHSGVLSQRAAAAAAGMYCGDTST 336

Query: 304 MEELQSAIQGAIAHCKNSLIQS 325
           MEELQSAIQGAIAHCKNSLIQ+
Sbjct: 337 MEELQSAIQGAIAHCKNSLIQT 358