Miyakogusa Predicted Gene

Lj0g3v0203569.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0203569.1 tr|A9SM14|A9SM14_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,44.25,3e-16,coiled-coil,NULL; seg,NULL,CUFF.12971.1
         (199 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g00360.1                                                       217   7e-57
Glyma08g24110.1                                                       203   1e-52

>Glyma07g00360.1 
          Length = 389

 Score =  217 bits (552), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 140/197 (71%), Gaps = 5/197 (2%)

Query: 3   MTTMSIRSSGLLWFRINCCDSKTGRGFGEN----RIKTNKADKGSVSPQ-RGSTSKQSRS 57
           M  MSIRSS    F+INC DSK GRGFGEN    RIKTNK+DKG VS Q +GS +KQSR 
Sbjct: 6   MHAMSIRSSAFFCFQINCSDSKQGRGFGENTNSNRIKTNKSDKGLVSQQSKGSANKQSRP 65

Query: 58  VPSQAPLLSSQVDRKLRNSSLDVDFEERLKEVRRSAIEQKKAEDKKEFGAIDYDEPISSD 117
           + SQAP LSSQ+D K RN  LDVDFEERLK VRRSA+EQKKAE++KEFGAIDYD PI SD
Sbjct: 66  LSSQAPRLSSQLDGKSRNDFLDVDFEERLKAVRRSALEQKKAEEEKEFGAIDYDAPIPSD 125

Query: 118 KKTIXXXXXXXXXXXXXXXXXXXXXXXXXPSGSVSPNEDSAVVKSKLSEEDKAALESRLK 177
             TI                         PSGSVSP EDSAVV SKLSEEDKA L+SRLK
Sbjct: 126 NTTIGVGTKIGVGVAVAVFGLVFAFGDFLPSGSVSPTEDSAVVNSKLSEEDKATLQSRLK 185

Query: 178 EFEATLSNSPRDPTALE 194
           EFEATLSNS RDPTALE
Sbjct: 186 EFEATLSNSSRDPTALE 202


>Glyma08g24110.1 
          Length = 393

 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/200 (63%), Positives = 135/200 (67%), Gaps = 15/200 (7%)

Query: 3   MTTMSIRSSGLLWFRINCCDSKTGRGFGEN--------RIKTNKADKGSVSPQRGSTSKQ 54
           M  MSIRSS    F+INC DSK GRGFGEN        RIKTNK+DKGS       T+KQ
Sbjct: 7   MHAMSIRSSAFFCFQINCSDSKQGRGFGENTNSNSNSNRIKTNKSDKGS-------TTKQ 59

Query: 55  SRSVPSQAPLLSSQVDRKLRNSSLDVDFEERLKEVRRSAIEQKKAEDKKEFGAIDYDEPI 114
           SR + SQAP LSSQ+D K RN  LDVDFEERLK VRRSA+EQKKAE++KEFGAIDY  PI
Sbjct: 60  SRPLSSQAPRLSSQLDGKSRNDFLDVDFEERLKAVRRSALEQKKAEEEKEFGAIDYGAPI 119

Query: 115 SSDKKTIXXXXXXXXXXXXXXXXXXXXXXXXXPSGSVSPNEDSAVVKSKLSEEDKAALES 174
            SD KTI                         PSGSVSP EDSAVV SKLSEEDKA L+S
Sbjct: 120 PSDNKTIGLGTKIGVGVAVAVFGLVFAFGDFLPSGSVSPTEDSAVVNSKLSEEDKATLQS 179

Query: 175 RLKEFEATLSNSPRDPTALE 194
           RLKEFEATLSNSPRD  ALE
Sbjct: 180 RLKEFEATLSNSPRDQIALE 199