Miyakogusa Predicted Gene

Lj0g3v0201619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201619.1 tr|B9SC90|B9SC90_RICCO DNA polymerase OS=Ricinus
communis GN=RCOM_1409950 PE=3 SV=1,93.33,0,no description,DNA
polymerase, palm domain; seg,NULL; coiled-coil,NULL; DNA POLYMERASE
ALPHA CATALYT,CUFF.12809.1
         (166 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g39430.1                                                       262   2e-70
Glyma05g10080.1                                                       129   2e-30
Glyma06g16110.2                                                        52   3e-07
Glyma06g16110.1                                                        52   3e-07
Glyma04g38800.2                                                        50   1e-06

>Glyma01g39430.1 
          Length = 1434

 Score =  262 bits (669), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 139/165 (84%), Gaps = 1/165 (0%)

Query: 1    MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDD 60
            MYGCLGFSNSRFYAKP+AELIT QGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLD+
Sbjct: 944  MYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDE 1003

Query: 61   IVKAKAMAGKVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGSTPYEVIER 120
            I +A  +A +VIQEVNKKYKCLEIDLDG                   +KDG TPYE IER
Sbjct: 1004 IEEANKIAVRVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLYKDG-TPYEAIER 1062

Query: 121  KGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKV 165
            KGLDIVRRDWS+LAKELGDFCLTQILSGGSCEDVVESIH+SLMKV
Sbjct: 1063 KGLDIVRRDWSILAKELGDFCLTQILSGGSCEDVVESIHNSLMKV 1107


>Glyma05g10080.1 
          Length = 490

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 87/144 (60%), Gaps = 5/144 (3%)

Query: 23  LQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIVKAKAMAGKVIQEVNKKYKCL 82
           L GREILQ T   V+ N   + +  + +        ++   A  MA +VIQ VNKKY CL
Sbjct: 29  LYGREILQITQVFVETNSFYKCVTSNNNWYTCLKSNNNTEDANKMAARVIQMVNKKYTCL 88

Query: 83  EIDLDGXXXXXXXXXXXXXXXXXXQFKDGSTPYEVIERKGLDIVRRDWSLLAKELGDFCL 142
           +IDLDG                   FKDG TPYE      LDIVRRDWSLLAKEL  FCL
Sbjct: 89  KIDLDGLYKRMLLLKKKKCAAVKLLFKDG-TPYEAY----LDIVRRDWSLLAKELAHFCL 143

Query: 143 TQILSGGSCEDVVESIHSSLMKVN 166
           TQILSGGSCEDV+ESIH+SL++++
Sbjct: 144 TQILSGGSCEDVMESIHNSLIRLS 167


>Glyma06g16110.2 
          Length = 1085

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 1   MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 52
           +YG  G +  +     I+  +T  GR++++ T  LV++          N EVIYGDTDS+
Sbjct: 686 VYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSV 745

Query: 53  MIYSGLDDIVKAKAMAGKVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 111
           M+  G+  + +A  +  +  + ++  + K ++++ +                      D 
Sbjct: 746 MVQFGVSAVEEAMNLGREAAEHISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDN 805

Query: 112 STPYEVIERKGLDIVRRDWSLLAKELGDFCLTQIL 146
              ++ ++ KG++ VRRD  LL K L + CL +IL
Sbjct: 806 ---FDKMDTKGIETVRRDNCLLVKNLVNDCLHKIL 837


>Glyma06g16110.1 
          Length = 1085

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 1   MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 52
           +YG  G +  +     I+  +T  GR++++ T  LV++          N EVIYGDTDS+
Sbjct: 686 VYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSV 745

Query: 53  MIYSGLDDIVKAKAMAGKVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 111
           M+  G+  + +A  +  +  + ++  + K ++++ +                      D 
Sbjct: 746 MVQFGVSAVEEAMNLGREAAEHISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDN 805

Query: 112 STPYEVIERKGLDIVRRDWSLLAKELGDFCLTQIL 146
              ++ ++ KG++ VRRD  LL K L + CL +IL
Sbjct: 806 ---FDKMDTKGIETVRRDNCLLVKNLVNDCLHKIL 837


>Glyma04g38800.2 
          Length = 432

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 1   MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 52
           +YG  G +  +     I+  +T  GR++++ T  +V++          N EVIYGDTDS+
Sbjct: 33  VYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKIVEDKFTTVNGYEHNAEVIYGDTDSV 92

Query: 53  MIYSGLDDIVKAKAMAGKVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 111
           M+  G+  + +A  +  +  + ++  + K ++++ +                      D 
Sbjct: 93  MVQFGVSAVEEAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDN 152

Query: 112 STPYEVIERKGLDIVRRDWSLLAKELGDFCLTQIL 146
              ++ ++ KG++ VRRD  LL K L + CL +IL
Sbjct: 153 ---FDKMDTKGIETVRRDNCLLVKNLVNDCLHKIL 184