Miyakogusa Predicted Gene

Lj0g3v0201119.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201119.2 tr|C7FD52|C7FD52_ARALP At4g14180-like protein
(Fragment) OS=Arabidopsis lyrata subsp. petraea PE=4
S,52,0.000000000000003,seg,NULL,CUFF.12769.2
         (165 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g36750.1                                                       251   3e-67
Glyma18g00660.1                                                       123   7e-29

>Glyma11g36750.1 
          Length = 1218

 Score =  251 bits (640), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/165 (73%), Positives = 139/165 (84%)

Query: 1    MSIRSILEGLVFYSDLRVATNCALCLSMLMRWENHAEETKLLGHSSWCRLVIEEMTVSLA 60
            MSIRSILEGLVFY+DLRVATNC+LCLSM++ WE   +ETK+L  SSWCRL+IEEMTVSLA
Sbjct: 1002 MSIRSILEGLVFYNDLRVATNCSLCLSMILGWEKLTKETKVLEESSWCRLIIEEMTVSLA 1061

Query: 61   APSLASQSFMESQRPAVXXXXXXXXXXXXPQWVRYVFNNSCISGILENIAATNLSSEILV 120
            AP+LASQSFM +QRPAV            PQW+R VF+NS ISGIL N++A+NLSSEIL 
Sbjct: 1062 APALASQSFMNNQRPAVLVAIALLKLHKIPQWMRSVFDNSSISGILGNLSASNLSSEILA 1121

Query: 121  LFRELLKSDFLSTEQITTINQILQECRKRMYTNNAQEGLPKEPVK 165
            LFRELLKS+FLSTEQI TINQ+LQECRKRMY+NNAQE LP EP+K
Sbjct: 1122 LFRELLKSNFLSTEQIATINQMLQECRKRMYSNNAQEDLPNEPIK 1166


>Glyma18g00660.1 
          Length = 1015

 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 71/92 (77%)

Query: 40   KLLGHSSWCRLVIEEMTVSLAAPSLASQSFMESQRPAVXXXXXXXXXXXXPQWVRYVFNN 99
             +L  SSWCRL+IEEMTVSLAAP+LASQSF  +QRPAV            PQW+R VF+N
Sbjct: 923  NVLEESSWCRLIIEEMTVSLAAPALASQSFTNNQRPAVLKGIALMKLHKIPQWMRSVFDN 982

Query: 100  SCISGILENIAATNLSSEILVLFRELLKSDFL 131
            S ISGILEN+AA+NLSSEIL LFRELLK +FL
Sbjct: 983  SSISGILENLAASNLSSEILALFRELLKFNFL 1014