Miyakogusa Predicted Gene

Lj0g3v0200439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0200439.1 tr|Q9FLE0|Q9FLE0_ARATH GTP-binding protein-like
OS=Arabidopsis thaliana GN=At5g39960 PE=4 SV=1,80,5e-19,MMR_HSR1,GTP
binding domain; no description,NULL; P-loop containing nucleoside
triphosphate hydrolas,CUFF.12715.1
         (121 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g40160.1                                                       129   9e-31
Glyma12g06150.1                                                        54   3e-08

>Glyma07g40160.1 
          Length = 545

 Score =  129 bits (323), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 71/81 (87%)

Query: 34  RGFSSSKYKPLDLDFTQLPISRLPTIIIIGRPNVGKSALFNRLIQRREALVYNTPEDHVT 93
           RGFSS       LDFT++ ISRLPT++I+GRPNVGKSALFNRLI+RREALVYNTP+DHVT
Sbjct: 19  RGFSSLSVVTAPLDFTEIQISRLPTVVILGRPNVGKSALFNRLIRRREALVYNTPDDHVT 78

Query: 94  RDIREGVAKLGNLRFRVLDPS 114
           RDIREG+AKL +LRFRVLD +
Sbjct: 79  RDIREGLAKLADLRFRVLDSA 99


>Glyma12g06150.1 
          Length = 632

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 51  LPISRLPTIIIIGRPNVGKSALFNRLIQRREALVYNTPEDHVTRDIREGVAKLGNLRFRV 110
           +P + LP + I+GRPNVGKSALFNRL+    A+V + P   VTRD   G +  G   F V
Sbjct: 124 IPDNLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP--GVTRDRLYGRSYWGEHEFMV 181

Query: 111 LD 112
           +D
Sbjct: 182 VD 183