Miyakogusa Predicted Gene

Lj0g3v0199939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199939.1 Non Chatacterized Hit- tr|I1KAP0|I1KAP0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,29.45,0.0000002,SUBFAMILY NOT NAMED,NULL; TOPOISOMERASE-RELATED
PROTEIN,NULL; seg,NULL,CUFF.12694.1
         (161 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g06250.1                                                       227   3e-60
Glyma07g06250.2                                                       227   4e-60
Glyma16g02900.1                                                       227   5e-60
Glyma04g41650.1                                                        49   2e-06

>Glyma07g06250.1 
          Length = 1322

 Score =  227 bits (579), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/164 (67%), Positives = 119/164 (72%), Gaps = 3/164 (1%)

Query: 1    MTRAAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXXXXAYLQGRYP 60
            MTR AIESSEH+ DILNSDFVSHWQNLQ+GRFCQ SRH               YLQGRYP
Sbjct: 996  MTRVAIESSEHRPDILNSDFVSHWQNLQYGRFCQNSRHPPSMTYPSPVMVPPVYLQGRYP 1055

Query: 61   LDGPGRP---DMNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMPRYRSGTGTYL 117
             DGPGRP   +MN+F+QLMSYGPR+VP APLQSVS RP ++YQR+ DDMPRYRSGTGTYL
Sbjct: 1056 WDGPGRPISGNMNIFSQLMSYGPRLVPVAPLQSVSNRPASIYQRYVDDMPRYRSGTGTYL 1115

Query: 118  PNPKASARDRHPTXXXXXXXXXXXXXHHSDREGNWNMNPKLRAT 161
            PNPK SARDRH T             HH DREGNWN N KLR T
Sbjct: 1116 PNPKVSARDRHSTNTRRGNYPYDRSDHHGDREGNWNTNSKLRGT 1159


>Glyma07g06250.2 
          Length = 1317

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/164 (67%), Positives = 119/164 (72%), Gaps = 3/164 (1%)

Query: 1    MTRAAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXXXXAYLQGRYP 60
            MTR AIESSEH+ DILNSDFVSHWQNLQ+GRFCQ SRH               YLQGRYP
Sbjct: 996  MTRVAIESSEHRPDILNSDFVSHWQNLQYGRFCQNSRHPPSMTYPSPVMVPPVYLQGRYP 1055

Query: 61   LDGPGRP---DMNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMPRYRSGTGTYL 117
             DGPGRP   +MN+F+QLMSYGPR+VP APLQSVS RP ++YQR+ DDMPRYRSGTGTYL
Sbjct: 1056 WDGPGRPISGNMNIFSQLMSYGPRLVPVAPLQSVSNRPASIYQRYVDDMPRYRSGTGTYL 1115

Query: 118  PNPKASARDRHPTXXXXXXXXXXXXXHHSDREGNWNMNPKLRAT 161
            PNPK SARDRH T             HH DREGNWN N KLR T
Sbjct: 1116 PNPKVSARDRHSTNTRRGNYPYDRSDHHGDREGNWNTNSKLRGT 1159


>Glyma16g02900.1 
          Length = 1321

 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/164 (67%), Positives = 119/164 (72%), Gaps = 3/164 (1%)

Query: 1    MTRAAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXXXXAYLQGRYP 60
            MTR AIESSEHK+DILNSDFVSHWQNLQ+GRFCQ SR                YLQGRYP
Sbjct: 1000 MTRVAIESSEHKSDILNSDFVSHWQNLQYGRFCQNSRLPPSMTYPSPGMVPPVYLQGRYP 1059

Query: 61   LDGPGRP---DMNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMPRYRSGTGTYL 117
             DGPGRP   +MN+F+QLM+YGPR+VP APLQSVS RP N+YQR+ DDMPRYRSGTGTYL
Sbjct: 1060 WDGPGRPISGNMNIFSQLMNYGPRLVPVAPLQSVSNRPANIYQRYVDDMPRYRSGTGTYL 1119

Query: 118  PNPKASARDRHPTXXXXXXXXXXXXXHHSDREGNWNMNPKLRAT 161
            PNPK SARDRH T             HH DREGNWN N KLR T
Sbjct: 1120 PNPKVSARDRHSTNTRRGNYNYDRSDHHGDREGNWNTNSKLRGT 1163


>Glyma04g41650.1 
          Length = 93

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 16/107 (14%)

Query: 14  DILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXXXXAYLQGRYPLDGPGRPDMNLFA 73
           DILN DF +H+ NLQ+GRFC+  +                +L+ + P  G  +  +N+  
Sbjct: 1   DILNGDFETHYANLQYGRFCKNPK------------SLPMHLREQLPWHGKPKGAINIVE 48

Query: 74  QLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMPRYRSGTGTYLPNP 120
              S     V   P Q  S    N  +     +PR+  GTGT+ P P
Sbjct: 49  HAHS----PVRVMPSQRASRLHGNTNESAGFWLPRFSDGTGTFFPKP 91