Miyakogusa Predicted Gene

Lj0g3v0196209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196209.1 Non Chatacterized Hit- tr|D7MHD8|D7MHD8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.65,4e-18,seg,NULL,CUFF.12452.1
         (208 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g13820.1                                                       265   3e-71
Glyma03g18770.1                                                       154   9e-38
Glyma03g18770.2                                                       153   1e-37

>Glyma16g13820.1 
          Length = 659

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/209 (60%), Positives = 154/209 (73%), Gaps = 13/209 (6%)

Query: 1   MALPEIHSWTLGGLVGAFVDLAIAYFLLCGSAFAFFAYKLCMFFGLFLPCPCKGSFGYRN 60
           MA  E HSWTLGGL+GAF+DL +AYFLLCGSAFAFF  K   F G  LPCPCKG+FG+R+
Sbjct: 1   MASQETHSWTLGGLIGAFIDLVLAYFLLCGSAFAFFVSKWFRFLGFCLPCPCKGTFGFRS 60

Query: 61  SNFCVHKMLFEWPSRKICSIQVMAVRRFPFDVLWLKGHSCNANDKMVAQKMFDNRLVELE 120
           S FCVH+++F+WPSRKICSIQVMA             HS +AND++ A++  DNR+VELE
Sbjct: 61  SRFCVHRLMFQWPSRKICSIQVMA------------DHSRSANDRVAAERTHDNRVVELE 108

Query: 121 DEASCSSYASPRLVSF-EKENGYDAKGKRVMSLKXXXXXXXXXXXXYDCGKISSVVPSDS 179
           DEASCSS ++PRL+ F ++EN YDAKGKRVMS+K            YDC K+SS VPS++
Sbjct: 109 DEASCSSCSAPRLLPFVDRENVYDAKGKRVMSMKRRSGVRRRRRASYDCTKVSSAVPSEN 168

Query: 180 LQSDVAVTSCLPCDGSIIRDRTSERIYPA 208
           LQSDV +T C PCDGSIIRD+TS  I P 
Sbjct: 169 LQSDVVLTPCSPCDGSIIRDKTSAGISPT 197


>Glyma03g18770.1 
          Length = 563

 Score =  154 bits (388), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 83  MAVRRFPFDVLWLKGHSCNANDKMVAQKMFDNRLVELEDEASCSSYASPRLVSF-EKENG 141
           MAV+RFPFD++W+KGHSC+ANDK+V ++  DNR+VELEDEASCSS + P L+ F + EN 
Sbjct: 1   MAVKRFPFDLVWVKGHSCSANDKVVTERTHDNRVVELEDEASCSSCSGPCLLPFVDWENV 60

Query: 142 YDAKGKRVMSLKXXXXXXXXXXXXYDCGKISSVVPSDSLQSDVAVTSCLPCDGSIIRDRT 201
           YDAKGKRVMS+K            YDC K+SS VPS++LQSDV +  C PCDGSIIRD+T
Sbjct: 61  YDAKGKRVMSMKRRSGVRCHRRASYDCAKVSSAVPSENLQSDVVLIPCSPCDGSIIRDKT 120

Query: 202 SERIYPA 208
           +  + P 
Sbjct: 121 NAGMSPT 127


>Glyma03g18770.2 
          Length = 528

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 83  MAVRRFPFDVLWLKGHSCNANDKMVAQKMFDNRLVELEDEASCSSYASPRLVSF-EKENG 141
           MAV+RFPFD++W+KGHSC+ANDK+V ++  DNR+VELEDEASCSS + P L+ F + EN 
Sbjct: 1   MAVKRFPFDLVWVKGHSCSANDKVVTERTHDNRVVELEDEASCSSCSGPCLLPFVDWENV 60

Query: 142 YDAKGKRVMSLKXXXXXXXXXXXXYDCGKISSVVPSDSLQSDVAVTSCLPCDGSIIRDRT 201
           YDAKGKRVMS+K            YDC K+SS VPS++LQSDV +  C PCDGSIIRD+T
Sbjct: 61  YDAKGKRVMSMKRRSGVRCHRRASYDCAKVSSAVPSENLQSDVVLIPCSPCDGSIIRDKT 120

Query: 202 SERIYPA 208
           +  + P 
Sbjct: 121 NAGMSPT 127