Miyakogusa Predicted Gene

Lj0g3v0195299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0195299.1 Non Chatacterized Hit- tr|G7KBS3|G7KBS3_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,38.12,2e-16,ARID-like,ARID/BRIGHT DNA-binding domain;
HMG-box,High mobility group, superfamily;
ARID,ARID/BRIGHT,gene.g15127.t1.1
         (288 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g02210.1                                                        61   2e-09
Glyma10g44040.1                                                        57   2e-08
Glyma06g48010.1                                                        55   7e-08
Glyma04g12530.1                                                        55   8e-08

>Glyma04g02210.1 
          Length = 322

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 17  DSECFYKNLTALLESSGLSLILN-------DLYLFYLEVTKRGGYHQVDQEKKWGEVVSA 69
           DS  F+  L       G   ++        DL++ Y+EVT+R GY +V  EKKW EV S 
Sbjct: 29  DSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSV 88

Query: 70  LKLEGSNAKLSAQVEMLYANLLYEFEQLYFY--RCPTKQASTKAEGG 114
            K   +    S  +   Y +LLY +EQ++F+  R P    S  A  G
Sbjct: 89  FKFAATTTSASFVLRKHYFSLLYHYEQVHFFKARGPIYTPSADAFSG 135


>Glyma10g44040.1 
          Length = 354

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query: 40  DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYF 99
           DL+  ++EVT RGG  ++ +E+KW +V S      +    S  +   YA+LLY +EQ+YF
Sbjct: 10  DLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYF 69

Query: 100 YRC 102
           ++ 
Sbjct: 70  FKA 72


>Glyma06g48010.1 
          Length = 339

 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 13  DKTHDSECFYKNLTALLESSGLSLILN-------DLYLFYLEVTKRGGYHQVDQEKKWGE 65
           D   D+  F+  L A  ++ G    ++       DL+  ++EVT RGG  +V  ++KW E
Sbjct: 47  DIVRDANLFWGTLQAFHKTLGTKYKISTVGGTPLDLHRLFVEVTSRGGIEKVIVDRKWKE 106

Query: 66  VVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYFY 100
           V+     + +    S  V   Y ++LY FEQ+Y++
Sbjct: 107 VILTFNFKDTITNASFMVRKSYLSMLYHFEQVYYF 141


>Glyma04g12530.1 
          Length = 313

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 86/238 (36%), Gaps = 65/238 (27%)

Query: 13  DKTHDSECFYKNLTALLESSGLSLILN-------DLYLFYLEVTKRGGYHQVDQEKKWGE 65
           D   D+  F+  L A  +  G    +        DL+  ++EVT RGG  +V  ++KW E
Sbjct: 50  DIVRDANLFWGTLQAFHKILGTKYKVATVGGTSLDLHRLFVEVTSRGGIEKVIVDRKWKE 109

Query: 66  VVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYFY------------------RCPTKQA 107
           V+     + +    S  V   Y ++LY +EQ+Y++                     +   
Sbjct: 110 VILTFNFKDTITSASFVVRKSYLSMLYHYEQVYYFGRQGIPPPTPGTPVQAHDDMVSGTI 169

Query: 108 STKAEGGYVEPV--------------------------------LQPAPSNDKGRKKRGG 135
             K +GGYV  V                                L    SN + RK+   
Sbjct: 170 DAKFDGGYVVTVILGSEQLKGVLFHVPDNVSQSSHAEGTSSSQNLGDGTSNSQSRKRAKY 229

Query: 136 A------PTGRRTAYQIFVKQECARLRACSEDSLDRTRFLRMAIDTWKNMSEIEKQPY 187
           A      P   R+ Y  F  +  ARL+  S    +R    R+    W N+SE E+Q Y
Sbjct: 230 APRDPFRPKSNRSGYNFFFAENYARLKP-SYHGQERAISKRIGF-LWNNLSEAERQVY 285