Miyakogusa Predicted Gene

Lj0g3v0195229.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0195229.2 Non Chatacterized Hit- tr|D7UA24|D7UA24_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,86.33,0,PEPTIDE
CHAIN RELEASE FACTOR 2,Peptide chain release factor 2; PEPTIDE CHAIN
RELEASE FACTOR,NULL; co,CUFF.12338.2
         (139 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g39080.1                                                       165   1e-41
Glyma19g41650.1                                                       119   1e-27
Glyma09g38380.1                                                        57   8e-09

>Glyma03g39080.1 
          Length = 352

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/149 (59%), Positives = 95/149 (63%), Gaps = 20/149 (13%)

Query: 1   MLSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLARDENDXXX 60
           MLS  L+K DLW+DPV  GKISREHGSLLGKMKEVNA E+ELLEHI+MIKLAR+EN    
Sbjct: 45  MLSFHLSKEDLWNDPVRVGKISREHGSLLGKMKEVNAFEQELLEHIDMIKLAREENHADL 104

Query: 61  XXX----------XXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWA 110
                              +MRRN           GE DSCSCYIEVQ GAGG ESMDWA
Sbjct: 105 ESYGSTYYEVDLESLKALLNMRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGIESMDWA 164

Query: 111 AMVMQMYKSWAQRRGYKVTVVDEMPGEIA 139
           AM          RRGYKVTVVDEMPGEI 
Sbjct: 165 AM----------RRGYKVTVVDEMPGEIT 183


>Glyma19g41650.1 
          Length = 268

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 56/69 (81%)

Query: 71  MRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTV 130
           MRRN           GE DSCSCYIEVQ GAGGTESMDWAAMVMQMYKSWAQ+RGYKVTV
Sbjct: 1   MRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQQRGYKVTV 60

Query: 131 VDEMPGEIA 139
           VDEMPGEIA
Sbjct: 61  VDEMPGEIA 69


>Glyma09g38380.1 
          Length = 456

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 2/140 (1%)

Query: 2   LSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLAR--DENDXX 59
           L  Q      WD+   A +       +  K+K +N  + ++ +   ++ L    D  D  
Sbjct: 114 LEEQAADSSFWDNRGKAQETLSTLADVKDKIKLLNDFKTQVEDAETIVSLTEEMDSIDRG 173

Query: 60  XXXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKS 119
                     ++ ++           G +D     I +  GAGGT++ DWA M+++MY  
Sbjct: 174 LFEEASNLIKELNKSIDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMR 233

Query: 120 WAQRRGYKVTVVDEMPGEIA 139
           W +++ YK  VV++ PGE A
Sbjct: 234 WGEKQKYKTRVVEKSPGEEA 253