Miyakogusa Predicted Gene
- Lj0g3v0193039.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0193039.1 tr|Q2QPA8|Q2QPA8_ORYSJ HAT family dimerisation
domain containing protein OS=Oryza sativa subsp.
japo,56.63,2e-19,Ribonuclease H-like,Ribonuclease H-like domain;
Dimer_Tnp_hAT,HAT dimerisation; HAT DIMERISATION DOM,CUFF.12214.1
(151 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g09280.2 91 5e-19
Glyma15g21390.1 88 3e-18
Glyma08g23300.1 77 8e-15
Glyma01g06780.1 77 8e-15
Glyma10g22870.1 73 1e-13
Glyma19g06720.1 72 2e-13
Glyma16g19440.1 64 5e-11
Glyma18g24520.1 62 3e-10
Glyma09g27290.1 59 3e-09
Glyma02g21600.1 52 2e-07
Glyma09g24720.1 49 1e-06
>Glyma09g09280.2
Length = 750
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 2 FGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTKK 61
FGT AI R + PA WW+ +G S LQR+A++ILS S CEH+WS+ +QIH K+
Sbjct: 559 FGTELAISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDWSIYDQIHCKR 618
Query: 62 RNKLEHKRLEDLVFVKYNQAL 82
+N+L K+L D+++V YN L
Sbjct: 619 QNRLSQKKLNDIIYVHYNLRL 639
>Glyma15g21390.1
Length = 1523
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 14/144 (9%)
Query: 2 FGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTKK 61
FGT AI R + PA WW+ +G S LQR++++ILS S CEH+WS+ +QI K+
Sbjct: 708 FGTELAISTRTGLEPAAWWQQHGISCLELQRISVRILSQTCSSFACEHDWSIYDQIRCKR 767
Query: 62 RNKLEHKRLEDLVFVKYNQALVRRYNIRDELDPISLDDIDKS------NEWLVGT----M 111
+N+L K+L D+++V YN L R +R L +D ++W+V T
Sbjct: 768 QNRLSQKKLNDIIYVHYNLRL-RECQLRKRSRDSKLSSVDSVLQEHLLDDWIVDTNVQNF 826
Query: 112 DEDGN---DAENDRVFPNDDLTWD 132
D D N E D + ND + ++
Sbjct: 827 DVDKNFLFGVELDDEYENDSIDYE 850
>Glyma08g23300.1
Length = 671
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 7 AIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTKKRNKLE 66
++ RG + P WW ++G +TP LQ++ +K+L+ S S CE NWS IH+ KRNK+
Sbjct: 543 SLNDRGQMDPKAWWLVHGVNTPILQKVTLKLLAQPCSSSCCERNWSTYSFIHSLKRNKMA 602
Query: 67 HKRLEDLVFVKYNQALVRRYNIRDELDPISLDDIDKSNEWLVGTMDEDG---------ND 117
R EDLVFV N L+ R + + + DI + G +D+ G ++
Sbjct: 603 PHRAEDLVFVHSNLRLLSRNTPQYHQEETKMWDITGDD---FGLLDDCGILKIASLSLDE 659
Query: 118 AENDRVFPNDD 128
E + VF NDD
Sbjct: 660 PELESVFFNDD 670
>Glyma01g06780.1
Length = 653
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 5 RFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTKKRNK 64
R +RG + P WW ++G + P LQ++A+K+L+ S S CE NWS IH+ KRNK
Sbjct: 523 RLKCFKRGQMDPKAWWLVHGINAPILQKIALKLLAQPCSSSCCERNWSTYSFIHSLKRNK 582
Query: 65 LEHKRLEDLVFVKYNQALVRRYNIRDELDPISLDDIDKSNEWLVGTMDEDG--------- 115
+ + EDLVFV N L+ R + + + D+ + G++D+ G
Sbjct: 583 MAPHKAEDLVFVHSNLRLLSRNTPQYHQEETKMWDVARDA---FGSLDDCGILEIASLSL 639
Query: 116 NDAENDRVFPNDDL 129
++ E + VF NDD
Sbjct: 640 DEPELEGVFFNDDC 653
>Glyma10g22870.1
Length = 244
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 10/83 (12%)
Query: 26 STPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTKKRNKLEHKRLEDLVFVKYNQALVRR 85
S P LQ+LAI ILS S S CE NW+V E IH+KKRN LEH++L DLV+ K Q+
Sbjct: 98 SVPQLQKLAICILSQTCSASSCEWNWNVFEYIHSKKRNWLEHQKLNDLVYEKRQQS---- 153
Query: 86 YNIRDELDPISLDDIDKSNEWLV 108
DPI+L+ +D +W++
Sbjct: 154 ------YDPINLEALDDHIDWVM 170
>Glyma19g06720.1
Length = 3023
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 7 AIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTKKRNKLE 66
++ RG + P WW ++ + P LQ++A+K+L+ S S CE NWS IH+ KRNK+
Sbjct: 2895 SLNDRGQMDPKAWWLVHDINAPILQKIALKLLAQPCSSSCCERNWSTYSFIHSLKRNKMT 2954
Query: 67 HKRLEDLVFVKYNQALVRRYNIRDELDPISLDDIDKSNEWLVGTMDEDG---------ND 117
R E+LVFV N L+ R + + + D+ + G++D+ G ++
Sbjct: 2955 PHRAENLVFVHSNLRLLSRNTPQYHQEETKMWDVAGDD---FGSLDDCGILEIASLSLDE 3011
Query: 118 AENDRVFPNDD 128
E + VF NDD
Sbjct: 3012 PELEGVFFNDD 3022
>Glyma16g19440.1
Length = 354
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 19 WWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQI 57
WWRM+G TPNLQ+LAIKILSL + SGCE NWS EQ+
Sbjct: 225 WWRMFGSQTPNLQKLAIKILSLTCNASGCERNWSEFEQV 263
>Glyma18g24520.1
Length = 252
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 39 SLAYSVSGCEHNWSVLEQIHTKKRNKLEHKRLEDLVFVKYNQALVRRYNIRDE-LDPISL 97
++ Y GCE NWSV E IH+KK N EH++L D V+V+YN L RR ++ + DPI++
Sbjct: 142 AIVYCSLGCERNWSVFEHIHSKKINGFEHQKLNDFVYVRYNLRLQRRIWLKKQNYDPINI 201
>Glyma09g27290.1
Length = 275
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 50 NWSVLEQIHTKKRNKLEHKRLEDLVFVKYNQALVRRYNIRDELD-PISLDDIDKSNEWLV 108
NWSV E IHTKKRN+LEH+ L DLV+V YN L R + PI + ID + W++
Sbjct: 147 NWSVFEHIHTKKRNRLEHQILNDLVYVTYNLHLKDRSRYKKTCYVPIDYESIDHVDCWVI 206
Query: 109 GT-------MDEDGNDAENDRVFPNDD 128
+DE N ++ P DD
Sbjct: 207 EEETPPNLDIDEFKNALYHESAIPFDD 233
>Glyma02g21600.1
Length = 218
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 88 IRDELDPISLDDIDKSNEWLVGTMDEDGNDAENDRVFPNDDLTWDVVYQASGIGEPTINT 147
D +DPI L+ +D SNEWL+ M DAE++ VF +D TW V A+GI E T
Sbjct: 102 FHDGMDPILLNGVDDSNEWLLEEMGRGDEDAEDELVFNDDTWTWGAVANATGIRELLTYT 161
Query: 148 RRGT 151
R+ T
Sbjct: 162 RQQT 165
>Glyma09g24720.1
Length = 199
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 2 FGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGC 47
FG+ +IE R A+ P WW M+G STP LQ+LA+K+L S S C
Sbjct: 57 FGSFDSIEDRWALDPKTWWVMHGSSTPILQKLALKLLVQPCSSSCC 102