Miyakogusa Predicted Gene

Lj0g3v0190999.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0190999.1 Non Chatacterized Hit- tr|A2YT86|A2YT86_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,41.51,3e-19,DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE
(RNA POLYMERASE III SUBUNIT 5),NULL; Sin_N,DNA-d,CUFF.12106.1
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01200.1                                                       171   5e-43

>Glyma11g01200.1 
          Length = 680

 Score =  171 bits (432), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 97/116 (83%), Gaps = 1/116 (0%)

Query: 55  NVEDDPMDEDT-VEDQIVREIDVFFTPSLDENTELYVLQYPLRPSWRPYEFEERCKEVRL 113
           +V DDP+DED   ED +VREIDVFF+PS+D  T+LYV QYPLRPSWRPY+ +E+C+EVRL
Sbjct: 94  SVRDDPIDEDIPEEDTVVREIDVFFSPSVDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRL 153

Query: 114 KPISSRVEIDLSIDLDSQNIDRDFADKYSITKQTLHTPWEPATANGCVVGLLTGDK 169
           K  +S VEIDLSIDLDS +ID++FA KY+ITKQTL T W+P+ ANGC VGLL GDK
Sbjct: 154 KTKTSEVEIDLSIDLDSDHIDKEFATKYNITKQTLSTTWKPSHANGCAVGLLMGDK 209