Miyakogusa Predicted Gene

Lj0g3v0187669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187669.1 Non Chatacterized Hit- tr|I0Z5K8|I0Z5K8_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,41.82,3e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
CDC27,DNA polymerase subunit Cdc27,CUFF.11933.1
         (120 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36020.1                                                       228   1e-60
Glyma13g34330.1                                                        74   5e-14

>Glyma12g36020.1 
          Length = 479

 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 104/120 (86%), Positives = 115/120 (95%)

Query: 1   MAQTKTLALIDEIESLVSDKLQVVSYKWLSRSYMISSDEAKRLLQEFVQKHEGGLEVVYA 60
           MAQT+TL+ I EIESLVSDKLQVVSYKWLSR+YM+SSDEAKRLLQEFVQKHEGGLEVVYA
Sbjct: 1   MAQTQTLSFIHEIESLVSDKLQVVSYKWLSRNYMVSSDEAKRLLQEFVQKHEGGLEVVYA 60

Query: 61  LSGWLKSSHPSYHIRLVSGSKVAEAQKVFDGNCSVQVYSVQASIPKDPAVLWNTEFIQAE 120
           LSGWLKS+HPSYH+RLV+G K+AEAQ+ FDG+CSVQ+YSVQASIPKDPAVLWN EFIQAE
Sbjct: 61  LSGWLKSNHPSYHVRLVTGPKLAEAQQEFDGDCSVQIYSVQASIPKDPAVLWNAEFIQAE 120


>Glyma13g34330.1 
          Length = 248

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/37 (86%), Positives = 35/37 (94%)

Query: 84  EAQKVFDGNCSVQVYSVQASIPKDPAVLWNTEFIQAE 120
           EAQ+ FDG+CSVQ+YSVQASIPKDPAVLWN EFIQAE
Sbjct: 1   EAQQEFDGDCSVQIYSVQASIPKDPAVLWNAEFIQAE 37